Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PTGFRN (prostaglandin F2 receptor negative regulator)

Identity

Other namesCD315
CD9P-1
EWI-F
FPRP
SMAP-6
HGNC (Hugo) PTGFRN
LocusID (NCBI) 5738
Location 1p13.1
Location_base_pair Starts at 117452689 and ends at 117532972 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)PTGFRN   9601
Entrez_Gene (NCBI)PTGFRN  5738  prostaglandin F2 receptor negative regulator
Cards
GeneCards (Weizmann)PTGFRN
Ensembl (Hinxton)ENSG00000134247 [Gene_View]  chr1:117452689-117532972 [Contig_View]  PTGFRN [Vega]
AceView (NCBI)PTGFRN
Genatlas (Paris)PTGFRN
SOURCE (Stanford)NM_020440
Genomic and cartography
GoldenPath (UCSC)PTGFRN  -  1p13.1   chr1:117452689-117532972 +  1p13.1   [Description]    (hg19-Feb_2009)
EnsemblPTGFRN - 1p13.1 [CytoView]
Mapping of homologs : NCBIPTGFRN [Mapview]
OMIM601204   
Gene and transcription
Genbank (Entrez)AB014734 AB037857 AK001863 AK024785 AK074637
RefSeq transcript (SRS)NM_020440
RefSeq transcript (Entrez)NM_020440
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838594 NW_004077990
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838594 NW_004077990
Consensus coding sequences : CCDS (NCBI)PTGFRN
Cluster EST : UnigeneHs.418093 [ SRS ] Hs.418093 [ NCBI ]
CGAP (NCI)Hs.418093
Alternative Splicing : Fast-db (Paris)GSHG0000846
Alternative Splicing GalleryENSG00000134247
Gene ExpressionPTGFRN [ NCBI-GEO ]   PTGFRN [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2B2 (SRS) Q9P2B2 (Uniprot)
NextProtQ9P2B2
With graphics : InterProQ9P2B2
Splice isoforms : SwissVarQ9P2B2(Swissvar)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)   
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (SRS)Ig-like    Ig-like_fold    Ig_sub    Ig_V-set   
Domains : Interpro (EBI)Ig-like    Ig-like_fold    Ig_sub    Ig_V-set   
Related proteins : CluSTrQ9P2B2
Domain families : Pfam (SRS)V-set (PF07686)   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
DMDM5738
Blocks (Seattle)Q9P2B2
Human Protein AtlasENSG00000134247
HPRD03124
IPIIPI00022048   IPI01012315   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2B2
IntAct (EBI)Q9P2B2
FunCoupENSG00000134247
REACTOMEPTGFRN
Protein Interaction Database5738
BioGRIDPTGFRN
InParanoidQ9P2B2
Interologous Interaction database Q9P2B2
IntegromeDBPTGFRN
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PTGFRN
SNP (GeneSNP Utah)PTGFRN
SNP : HGBasePTGFRN
Genetic variants : HAPMAPPTGFRN
Somatic Mutations in Cancer : COSMICPTGFRN 
CONAN: Copy Number AnalysisPTGFRN 
Mutations and Diseases : HGMDPTGFRN
OMIM601204   
GENETests601204   
Disease Genetic AssociationPTGFRN
Huge Navigator PTGFRN [HugePedia]  PTGFRN [HugeCancerGEM]
Genomic VariantsPTGFRN  PTGFRN [DGVbeta]
snp3D : Map Gene to Disease5738
General knowledge
Homologs : HomoloGenePTGFRN
Homology/Alignments : Family Browser (UCSC)PTGFRN
Phylogenetic Trees/Animal Genes : TreeFamPTGFRN
Chemical/Protein Interactions : CTD5738
Chemical/Pharm GKB GenePA33950
Clinical trialPTGFRN
Cancer Resource (Charite)ENSG00000134247
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  Golgi apparatus  integral to membrane  lipid particle organization  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  Golgi apparatus  integral to membrane  lipid particle organization  
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
PubGenePTGFRN
iHOPPTGFRN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:41:53 CEST 2013
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