Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PTH2 (parathyroid hormone 2)

Identity

Alias_symbol (synonym)TIP39
Other alias
HGNC (Hugo) PTH2
LocusID (NCBI) 113091
Atlas_Id 72381
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49422414 and ends at 49423441 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTH2   30828
Cards
Entrez_Gene (NCBI)PTH2  113091  parathyroid hormone 2
AliasesTIP39
GeneCards (Weizmann)PTH2
Ensembl hg19 (Hinxton)ENSG00000142538 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142538 [Gene_View]  chr19:49422414-49423441 [Contig_View]  PTH2 [Vega]
ICGC DataPortalENSG00000142538
TCGA cBioPortalPTH2
AceView (NCBI)PTH2
Genatlas (Paris)PTH2
WikiGenes113091
SOURCE (Princeton)PTH2
Genetics Home Reference (NIH)PTH2
Genomic and cartography
GoldenPath hg38 (UCSC)PTH2  -     chr19:49422414-49423441 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTH2  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblPTH2 - 19q13.33 [CytoView hg19]  PTH2 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIPTH2 [Mapview hg19]  PTH2 [Mapview hg38]
OMIM608386   
Gene and transcription
Genbank (Entrez)AY037555 AY048588 BC093995 BC093997
RefSeq transcript (Entrez)NM_178449
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTH2
Cluster EST : UnigeneHs.339845 [ NCBI ]
CGAP (NCI)Hs.339845
Alternative Splicing GalleryENSG00000142538
Gene ExpressionPTH2 [ NCBI-GEO ]   PTH2 [ EBI - ARRAY_EXPRESS ]   PTH2 [ SEEK ]   PTH2 [ MEM ]
Gene Expression Viewer (FireBrowse)PTH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113091
GTEX Portal (Tissue expression)PTH2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A98
Splice isoforms : SwissVarQ96A98
PhosPhoSitePlusQ96A98
Domains : Interpro (EBI)TIP39   
Domain families : Pfam (Sanger)TIP39 (PF14980)   
Domain families : Pfam (NCBI)pfam14980   
Conserved Domain (NCBI)PTH2
DMDM Disease mutations113091
Blocks (Seattle)PTH2
SuperfamilyQ96A98
Human Protein AtlasENSG00000142538
Peptide AtlasQ96A98
HPRD16328
IPIIPI00792227   
Protein Interaction databases
DIP (DOE-UCLA)Q96A98
IntAct (EBI)Q96A98
FunCoupENSG00000142538
BioGRIDPTH2
STRING (EMBL)PTH2
ZODIACPTH2
Ontologies - Pathways
QuickGOQ96A98
Ontology : AmiGOextracellular region  neuropeptide signaling pathway  
Ontology : EGO-EBIextracellular region  neuropeptide signaling pathway  
NDEx NetworkPTH2
Atlas of Cancer Signalling NetworkPTH2
Wikipedia pathwaysPTH2
Orthology - Evolution
OrthoDB113091
GeneTree (enSembl)ENSG00000142538
Phylogenetic Trees/Animal Genes : TreeFamPTH2
HOVERGENQ96A98
HOGENOMQ96A98
Homologs : HomoloGenePTH2
Homology/Alignments : Family Browser (UCSC)PTH2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTH2
dbVarPTH2
ClinVarPTH2
1000_GenomesPTH2 
Exome Variant ServerPTH2
ExAC (Exome Aggregation Consortium)PTH2 (select the gene name)
Genetic variants : HAPMAP113091
Genomic Variants (DGV)PTH2 [DGVbeta]
DECIPHERPTH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTH2 
Mutations
ICGC Data PortalPTH2 
TCGA Data PortalPTH2 
Broad Tumor PortalPTH2
OASIS PortalPTH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTH2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTH2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTH2
DgiDB (Drug Gene Interaction Database)PTH2
DoCM (Curated mutations)PTH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTH2 (select a term)
intoGenPTH2
Cancer3DPTH2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608386   
Orphanet
MedgenPTH2
Genetic Testing Registry PTH2
NextProtQ96A98 [Medical]
TSGene113091
GENETestsPTH2
Target ValidationPTH2
Huge Navigator PTH2 [HugePedia]
snp3D : Map Gene to Disease113091
BioCentury BCIQPTH2
ClinGenPTH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113091
Chemical/Pharm GKB GenePA162400324
Clinical trialPTH2
Miscellaneous
canSAR (ICR)PTH2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTH2
EVEXPTH2
GoPubMedPTH2
iHOPPTH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:35:37 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.