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PTMS (parathymosin)

Identity

Alias (NCBI)ParaT
HGNC (Hugo) PTMS
HGNC Alias symbParaT
LocusID (NCBI) 5763
Atlas_Id 72383
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6766363 and ends at 6770952 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AMPD3 (11p15.4) / PTMS (12p13.31)AP1G2 (14q11.2) / PTMS (12p13.31)AP3D1 (19p13.3) / PTMS (12p13.31)
CANX (5q35.3) / PTMS (12p13.31)CCP110 (16p12.3) / PTMS (12p13.31)CLDN5 (22q11.21) / PTMS (12p13.31)
DBN1 (5q35.3) / PTMS (12p13.31)HSP90B1 (12q23.3) / PTMS (12p13.31)MLF2 (12p13.31) / PTMS (12p13.31)
NCL (2q37.1) / PTMS (12p13.31)PTMA (2q37.1) / PTMS (12p13.31)PTMS (12p13.31) / DDX17 (22q13.1)
PTMS (12p13.31) / DDX24 (14q32.12)PTMS (12p13.31) / EIF4G1 (3q27.1)PTMS (12p13.31) / FAM177A1 (14q13.2)
PTMS (12p13.31) / FHOD3 (18q12.2)PTMS (12p13.31) / KIAA1429 (8q22.1)PTMS (12p13.31) / MYH9 (22q12.3)
PTMS (12p13.31) / NCL (2q37.1)PTMS (12p13.31) / NDRG1 (8q24.22)PTMS (12p13.31) / OPN1LW (Xq28)
PTMS (12p13.31) / TAF3 (10p14)RGL2 (6p21.32) / PTMS (12p13.31)RNF220 (1p34.1) / PTMS (12p13.31)
TPM1 (15q22.2) / PTMS (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PTMS   9629
Cards
Entrez_Gene (NCBI)PTMS    parathymosin
AliasesParaT
GeneCards (Weizmann)PTMS
Ensembl hg19 (Hinxton)ENSG00000159335 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159335 [Gene_View]  ENSG00000159335 [Sequence]  chr12:6766363-6770952 [Contig_View]  PTMS [Vega]
ICGC DataPortalENSG00000159335
TCGA cBioPortalPTMS
AceView (NCBI)PTMS
Genatlas (Paris)PTMS
SOURCE (Princeton)PTMS
Genetics Home Reference (NIH)PTMS
Genomic and cartography
GoldenPath hg38 (UCSC)PTMS  -     chr12:6766363-6770952 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTMS  -     12p13.31   [Description]    (hg19-Feb_2009)
GoldenPathPTMS - 12p13.31 [CytoView hg19]  PTMS - 12p13.31 [CytoView hg38]
ImmunoBaseENSG00000159335
Genome Data Viewer NCBIPTMS [Mapview hg19]  
OMIM168440   
Gene and transcription
Genbank (Entrez)BC007616 BC017025 BC128229 BE791815 BM451233
RefSeq transcript (Entrez)NM_001330333 NM_002824
Consensus coding sequences : CCDS (NCBI)PTMS
Gene ExpressionPTMS [ NCBI-GEO ]   PTMS [ EBI - ARRAY_EXPRESS ]   PTMS [ SEEK ]   PTMS [ MEM ]
Gene Expression Viewer (FireBrowse)PTMS [ Firebrowse - Broad ]
GenevisibleExpression of PTMS in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5763
GTEX Portal (Tissue expression)PTMS
Human Protein AtlasENSG00000159335-PTMS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20962   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP20962  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP20962
PhosPhoSitePlusP20962
Domains : Interpro (EBI)Pro/parathymosin   
Domain families : Pfam (Sanger)Prothymosin (PF03247)   
Domain families : Pfam (NCBI)pfam03247   
Conserved Domain (NCBI)PTMS
SuperfamilyP20962
AlphaFold pdb e-kbP20962   
Human Protein Atlas [tissue]ENSG00000159335-PTMS [tissue]
HPRD01344
Protein Interaction databases
DIP (DOE-UCLA)P20962
IntAct (EBI)P20962
BioGRIDPTMS
STRING (EMBL)PTMS
ZODIACPTMS
Ontologies - Pathways
QuickGOP20962
Ontology : AmiGOimmune system process  nucleus  DNA replication  
Ontology : EGO-EBIimmune system process  nucleus  DNA replication  
NDEx NetworkPTMS
Atlas of Cancer Signalling NetworkPTMS
Wikipedia pathwaysPTMS
Orthology - Evolution
OrthoDB5763
GeneTree (enSembl)ENSG00000159335
Phylogenetic Trees/Animal Genes : TreeFamPTMS
Homologs : HomoloGenePTMS
Homology/Alignments : Family Browser (UCSC)PTMS
Gene fusions - Rearrangements
Fusion : QuiverPTMS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTMS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTMS
dbVarPTMS
ClinVarPTMS
MonarchPTMS
1000_GenomesPTMS 
Exome Variant ServerPTMS
GNOMAD BrowserENSG00000159335
Varsome BrowserPTMS
ACMGPTMS variants
VarityP20962
Genomic Variants (DGV)PTMS [DGVbeta]
DECIPHERPTMS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTMS 
Mutations
ICGC Data PortalPTMS 
TCGA Data PortalPTMS 
Broad Tumor PortalPTMS
OASIS PortalPTMS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTMS  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPTMS
Mutations and Diseases : HGMDPTMS
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPTMS
DgiDB (Drug Gene Interaction Database)PTMS
DoCM (Curated mutations)PTMS
CIViC (Clinical Interpretations of Variants in Cancer)PTMS
Cancer3DPTMS
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM168440   
Orphanet
DisGeNETPTMS
MedgenPTMS
Genetic Testing Registry PTMS
NextProtP20962 [Medical]
GENETestsPTMS
Target ValidationPTMS
Huge Navigator PTMS [HugePedia]
ClinGenPTMS
Clinical trials, drugs, therapy
MyCancerGenomePTMS
Protein Interactions : CTDPTMS
Pharm GKB GenePA33973
PharosP20962
Clinical trialPTMS
Miscellaneous
canSAR (ICR)PTMS
HarmonizomePTMS
DataMed IndexPTMS
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPTMS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:17:37 CEST 2021

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