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PTMS (parathymosin)

Identity

Alias_symbol (synonym)ParaT
Other alias
HGNC (Hugo) PTMS
LocusID (NCBI) 5763
Atlas_Id 72383
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6766317 and ends at 6770952 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AMPD3 (11p15.4) / PTMS (12p13.31)AP1G2 (14q11.2) / PTMS (12p13.31)AP3D1 (19p13.3) / PTMS (12p13.31)
CANX (5q35.3) / PTMS (12p13.31)CCP110 (16p12.3) / PTMS (12p13.31)CLDN5 (22q11.21) / PTMS (12p13.31)
DBN1 (5q35.3) / PTMS (12p13.31)HSP90B1 (12q23.3) / PTMS (12p13.31)MLF2 (12p13.31) / PTMS (12p13.31)
NCL (2q37.1) / PTMS (12p13.31)PTMA (2q37.1) / PTMS (12p13.31)PTMS (12p13.31) / DDX17 (22q13.1)
PTMS (12p13.31) / DDX24 (14q32.12)PTMS (12p13.31) / EIF4G1 (3q27.1)PTMS (12p13.31) / FAM177A1 (14q13.2)
PTMS (12p13.31) / FHOD3 (18q12.2)PTMS (12p13.31) / KIAA1429 (8q22.1)PTMS (12p13.31) / MYH9 (22q12.3)
PTMS (12p13.31) / NCL (2q37.1)PTMS (12p13.31) / NDRG1 (8q24.22)PTMS (12p13.31) / OPN1LW (Xq28)
PTMS (12p13.31) / TAF3 (10p14)RGL2 (6p21.32) / PTMS (12p13.31)RNF220 (1p34.1) / PTMS (12p13.31)
TPM1 (15q22.2) / PTMS (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTMS   9629
Cards
Entrez_Gene (NCBI)PTMS  5763  parathymosin
AliasesParaT
GeneCards (Weizmann)PTMS
Ensembl hg19 (Hinxton)ENSG00000159335 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159335 [Gene_View]  chr12:6766317-6770952 [Contig_View]  PTMS [Vega]
ICGC DataPortalENSG00000159335
TCGA cBioPortalPTMS
AceView (NCBI)PTMS
Genatlas (Paris)PTMS
WikiGenes5763
SOURCE (Princeton)PTMS
Genetics Home Reference (NIH)PTMS
Genomic and cartography
GoldenPath hg38 (UCSC)PTMS  -     chr12:6766317-6770952 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTMS  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblPTMS - 12p13.31 [CytoView hg19]  PTMS - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIPTMS [Mapview hg19]  PTMS [Mapview hg38]
OMIM168440   
Gene and transcription
Genbank (Entrez)BC007616 BC017025 BC128229 BE791815 BM451233
RefSeq transcript (Entrez)NM_001330333 NM_002824
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTMS
Cluster EST : UnigeneHs.504613 [ NCBI ]
CGAP (NCI)Hs.504613
Alternative Splicing GalleryENSG00000159335
Gene ExpressionPTMS [ NCBI-GEO ]   PTMS [ EBI - ARRAY_EXPRESS ]   PTMS [ SEEK ]   PTMS [ MEM ]
Gene Expression Viewer (FireBrowse)PTMS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5763
GTEX Portal (Tissue expression)PTMS
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20962   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP20962  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP20962
Splice isoforms : SwissVarP20962
PhosPhoSitePlusP20962
Domains : Interpro (EBI)Pro/parathymosin   
Domain families : Pfam (Sanger)Prothymosin (PF03247)   
Domain families : Pfam (NCBI)pfam03247   
Conserved Domain (NCBI)PTMS
DMDM Disease mutations5763
Blocks (Seattle)PTMS
SuperfamilyP20962
Human Protein AtlasENSG00000159335
Peptide AtlasP20962
HPRD01344
IPIIPI00550020   IPI00830138   IPI00815656   IPI01009878   IPI01015029   
Protein Interaction databases
DIP (DOE-UCLA)P20962
IntAct (EBI)P20962
FunCoupENSG00000159335
BioGRIDPTMS
STRING (EMBL)PTMS
ZODIACPTMS
Ontologies - Pathways
QuickGOP20962
Ontology : AmiGOimmune system process  nucleus  DNA replication  
Ontology : EGO-EBIimmune system process  nucleus  DNA replication  
NDEx NetworkPTMS
Atlas of Cancer Signalling NetworkPTMS
Wikipedia pathwaysPTMS
Orthology - Evolution
OrthoDB5763
GeneTree (enSembl)ENSG00000159335
Phylogenetic Trees/Animal Genes : TreeFamPTMS
HOVERGENP20962
HOGENOMP20962
Homologs : HomoloGenePTMS
Homology/Alignments : Family Browser (UCSC)PTMS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTMS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTMS
dbVarPTMS
ClinVarPTMS
1000_GenomesPTMS 
Exome Variant ServerPTMS
ExAC (Exome Aggregation Consortium)PTMS (select the gene name)
Genetic variants : HAPMAP5763
Genomic Variants (DGV)PTMS [DGVbeta]
DECIPHERPTMS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTMS 
Mutations
ICGC Data PortalPTMS 
TCGA Data PortalPTMS 
Broad Tumor PortalPTMS
OASIS PortalPTMS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTMS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTMS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTMS
DgiDB (Drug Gene Interaction Database)PTMS
DoCM (Curated mutations)PTMS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTMS (select a term)
intoGenPTMS
Cancer3DPTMS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM168440   
Orphanet
MedgenPTMS
Genetic Testing Registry PTMS
NextProtP20962 [Medical]
TSGene5763
GENETestsPTMS
Target ValidationPTMS
Huge Navigator PTMS [HugePedia]
snp3D : Map Gene to Disease5763
BioCentury BCIQPTMS
ClinGenPTMS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5763
Chemical/Pharm GKB GenePA33973
Clinical trialPTMS
Miscellaneous
canSAR (ICR)PTMS (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTMS
EVEXPTMS
GoPubMedPTMS
iHOPPTMS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:51 CEST 2017

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