Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PTOV1 (PTOV1 extended AT-hook containing adaptor protein)

Identity

Alias (NCBI)ACID2
PTOV-1
HGNC (Hugo) PTOV1
HGNC Previous nameprostate tumor overexpressed 1
LocusID (NCBI) 53635
Atlas_Id 41905
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49851159 and ends at 49860742 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABHD17C (15q25.1) / PTOV1 (19q13.33)NOC4L (12q24.33) / PTOV1 (19q13.33)PSAP (10q22.1) / PTOV1 (19q13.33)
PTOV1 (19q13.33) / PTOV1 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PTOV1   9632
Cards
Entrez_Gene (NCBI)PTOV1    PTOV1 extended AT-hook containing adaptor protein
AliasesACID2; PTOV-1
GeneCards (Weizmann)PTOV1
Ensembl hg19 (Hinxton)ENSG00000104960 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104960 [Gene_View]  ENSG00000104960 [Sequence]  chr19:49851159-49860742 [Contig_View]  PTOV1 [Vega]
ICGC DataPortalENSG00000104960
TCGA cBioPortalPTOV1
AceView (NCBI)PTOV1
Genatlas (Paris)PTOV1
SOURCE (Princeton)PTOV1
Genetics Home Reference (NIH)PTOV1
Genomic and cartography
GoldenPath hg38 (UCSC)PTOV1  -     chr19:49851159-49860742 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTOV1  -     19q13.33   [Description]    (hg19-Feb_2009)
GoldenPathPTOV1 - 19q13.33 [CytoView hg19]  PTOV1 - 19q13.33 [CytoView hg38]
ImmunoBaseENSG00000104960
genome Data Viewer NCBIPTOV1 [Mapview hg19]  
OMIM610195   
Gene and transcription
Genbank (Entrez)AA582677 AF218026 AJ617480 AK057817 AK294366
RefSeq transcript (Entrez)NM_001305105 NM_001305108 NM_001364745 NM_001364747 NM_001364748 NM_001364749 NM_001364750 NM_017432
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTOV1
Alternative Splicing GalleryENSG00000104960
Gene ExpressionPTOV1 [ NCBI-GEO ]   PTOV1 [ EBI - ARRAY_EXPRESS ]   PTOV1 [ SEEK ]   PTOV1 [ MEM ]
Gene Expression Viewer (FireBrowse)PTOV1 [ Firebrowse - Broad ]
GenevisibleExpression of PTOV1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53635
GTEX Portal (Tissue expression)PTOV1
Human Protein AtlasENSG00000104960-PTOV1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YD1
Splice isoforms : SwissVarQ86YD1
PhosPhoSitePlusQ86YD1
Domains : Interpro (EBI)Med25_PTOV    PTOV_dom_sf   
Domain families : Pfam (Sanger)Med25 (PF11232)   
Domain families : Pfam (NCBI)pfam11232   
Conserved Domain (NCBI)PTOV1
Blocks (Seattle)PTOV1
SuperfamilyQ86YD1
Human Protein Atlas [tissue]ENSG00000104960-PTOV1 [tissue]
Peptide AtlasQ86YD1
HPRD17929
IPIIPI00010118   IPI00432761   IPI00639792   IPI00908671   
Protein Interaction databases
DIP (DOE-UCLA)Q86YD1
IntAct (EBI)Q86YD1
BioGRIDPTOV1
STRING (EMBL)PTOV1
ZODIACPTOV1
Ontologies - Pathways
QuickGOQ86YD1
Ontology : AmiGOnucleoplasm  transcription regulator complex  plasma membrane  positive regulation of transcription by RNA polymerase II  perinuclear region of cytoplasm  
Ontology : EGO-EBInucleoplasm  transcription regulator complex  plasma membrane  positive regulation of transcription by RNA polymerase II  perinuclear region of cytoplasm  
NDEx NetworkPTOV1
Atlas of Cancer Signalling NetworkPTOV1
Wikipedia pathwaysPTOV1
Orthology - Evolution
OrthoDB53635
GeneTree (enSembl)ENSG00000104960
Phylogenetic Trees/Animal Genes : TreeFamPTOV1
HOGENOMQ86YD1
Homologs : HomoloGenePTOV1
Homology/Alignments : Family Browser (UCSC)PTOV1
Gene fusions - Rearrangements
Fusion : QuiverPTOV1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTOV1 [hg38]
dbVarPTOV1
ClinVarPTOV1
MonarchPTOV1
1000_GenomesPTOV1 
Exome Variant ServerPTOV1
GNOMAD BrowserENSG00000104960
Varsome BrowserPTOV1
Genomic Variants (DGV)PTOV1 [DGVbeta]
DECIPHERPTOV1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTOV1 
Mutations
ICGC Data PortalPTOV1 
TCGA Data PortalPTOV1 
Broad Tumor PortalPTOV1
OASIS PortalPTOV1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTOV1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPTOV1
Mutations and Diseases : HGMDPTOV1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTOV1
DgiDB (Drug Gene Interaction Database)PTOV1
DoCM (Curated mutations)PTOV1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTOV1 (select a term)
intoGenPTOV1
Cancer3DPTOV1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610195   
Orphanet
DisGeNETPTOV1
MedgenPTOV1
Genetic Testing Registry PTOV1
NextProtQ86YD1 [Medical]
GENETestsPTOV1
Target ValidationPTOV1
Huge Navigator PTOV1 [HugePedia]
ClinGenPTOV1
Clinical trials, drugs, therapy
MyCancerGenomePTOV1
Protein Interactions : CTD
Pharm GKB GenePA33976
PharosQ86YD1
Clinical trialPTOV1
Miscellaneous
canSAR (ICR)PTOV1 (select the gene name)
HarmonizomePTOV1
DataMed IndexPTOV1
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPTOV1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:41:43 CET 2021
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