Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PTOV1 (prostate tumor overexpressed 1)

Identity

Other aliasACID2
PTOV-1
HGNC (Hugo) PTOV1
LocusID (NCBI) 53635
Atlas_Id 41905
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50354377 and ends at 50364001 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ABHD17C (15q25.1) / PTOV1 (19q13.33)NOC4L (12q24.33) / PTOV1 (19q13.33)PSAP (10q22.1) / PTOV1 (19q13.33)
PTOV1 (19q13.33) / PTOV1 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTOV1   9632
Cards
Entrez_Gene (NCBI)PTOV1  53635  prostate tumor overexpressed 1
AliasesACID2; PTOV-1
GeneCards (Weizmann)PTOV1
Ensembl hg19 (Hinxton)ENSG00000104960 [Gene_View]  chr19:50354377-50364001 [Contig_View]  PTOV1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104960 [Gene_View]  chr19:50354377-50364001 [Contig_View]  PTOV1 [Vega]
ICGC DataPortalENSG00000104960
TCGA cBioPortalPTOV1
AceView (NCBI)PTOV1
Genatlas (Paris)PTOV1
WikiGenes53635
SOURCE (Princeton)PTOV1
Genetics Home Reference (NIH)PTOV1
Genomic and cartography
GoldenPath hg19 (UCSC)PTOV1  -     chr19:50354377-50364001 +  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PTOV1  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblPTOV1 - 19q13.33 [CytoView hg19]  PTOV1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIPTOV1 [Mapview hg19]  PTOV1 [Mapview hg38]
OMIM610195   
Gene and transcription
Genbank (Entrez)AA582677 AF218026 AJ617480 AK057817 AK294366
RefSeq transcript (Entrez)NM_001305105 NM_001305108 NM_017432
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)PTOV1
Cluster EST : UnigeneHs.587979 [ NCBI ]
CGAP (NCI)Hs.587979
Alternative Splicing GalleryENSG00000104960
Gene ExpressionPTOV1 [ NCBI-GEO ]   PTOV1 [ EBI - ARRAY_EXPRESS ]   PTOV1 [ SEEK ]   PTOV1 [ MEM ]
Gene Expression Viewer (FireBrowse)PTOV1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53635
GTEX Portal (Tissue expression)PTOV1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YD1
Splice isoforms : SwissVarQ86YD1
PhosPhoSitePlusQ86YD1
Domains : Interpro (EBI)Mediator_Med25   
Domain families : Pfam (Sanger)Med25 (PF11232)   
Domain families : Pfam (NCBI)pfam11232   
Conserved Domain (NCBI)PTOV1
DMDM Disease mutations53635
Blocks (Seattle)PTOV1
SuperfamilyQ86YD1
Human Protein AtlasENSG00000104960
Peptide AtlasQ86YD1
HPRD17929
IPIIPI00010118   IPI00432761   IPI00639792   IPI00908671   
Protein Interaction databases
DIP (DOE-UCLA)Q86YD1
IntAct (EBI)Q86YD1
FunCoupENSG00000104960
BioGRIDPTOV1
STRING (EMBL)PTOV1
ZODIACPTOV1
Ontologies - Pathways
QuickGOQ86YD1
Ontology : AmiGOnucleus  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  perinuclear region of cytoplasm  
Ontology : EGO-EBInucleus  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  perinuclear region of cytoplasm  
NDEx NetworkPTOV1
Atlas of Cancer Signalling NetworkPTOV1
Wikipedia pathwaysPTOV1
Orthology - Evolution
OrthoDB53635
GeneTree (enSembl)ENSG00000104960
Phylogenetic Trees/Animal Genes : TreeFamPTOV1
HOVERGENQ86YD1
HOGENOMQ86YD1
Homologs : HomoloGenePTOV1
Homology/Alignments : Family Browser (UCSC)PTOV1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTOV1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTOV1
dbVarPTOV1
ClinVarPTOV1
1000_GenomesPTOV1 
Exome Variant ServerPTOV1
ExAC (Exome Aggregation Consortium)PTOV1 (select the gene name)
Genetic variants : HAPMAP53635
Genomic Variants (DGV)PTOV1 [DGVbeta]
DECIPHER (Syndromes)19:50354377-50364001  ENSG00000104960
CONAN: Copy Number AnalysisPTOV1 
Mutations
ICGC Data PortalPTOV1 
TCGA Data PortalPTOV1 
Broad Tumor PortalPTOV1
OASIS PortalPTOV1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTOV1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTOV1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTOV1
DgiDB (Drug Gene Interaction Database)PTOV1
DoCM (Curated mutations)PTOV1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTOV1 (select a term)
intoGenPTOV1
Cancer3DPTOV1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610195   
Orphanet
MedgenPTOV1
Genetic Testing Registry PTOV1
NextProtQ86YD1 [Medical]
TSGene53635
GENETestsPTOV1
Huge Navigator PTOV1 [HugePedia]
snp3D : Map Gene to Disease53635
BioCentury BCIQPTOV1
ClinGenPTOV1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53635
Chemical/Pharm GKB GenePA33976
Clinical trialPTOV1
Miscellaneous
canSAR (ICR)PTOV1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTOV1
EVEXPTOV1
GoPubMedPTOV1
iHOPPTOV1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:23:35 CET 2017

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