Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PTPDC1 (protein tyrosine phosphatase domain containing 1)

Identity

Alias_symbol (synonym)PTP9Q22
FLJ37312
Other alias
HGNC (Hugo) PTPDC1
LocusID (NCBI) 138639
Atlas_Id 72386
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 96846711 and ends at 96872138 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C9orf3 (9q22.32) / PTPDC1 (9q22.32)PTPDC1 (9q22.32) / PTPDC1 (9q22.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTPDC1   30184
Cards
Entrez_Gene (NCBI)PTPDC1  138639  protein tyrosine phosphatase domain containing 1
AliasesPTP9Q22
GeneCards (Weizmann)PTPDC1
Ensembl hg19 (Hinxton)ENSG00000158079 [Gene_View]  chr9:96846711-96872138 [Contig_View]  PTPDC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000158079 [Gene_View]  chr9:96846711-96872138 [Contig_View]  PTPDC1 [Vega]
ICGC DataPortalENSG00000158079
TCGA cBioPortalPTPDC1
AceView (NCBI)PTPDC1
Genatlas (Paris)PTPDC1
WikiGenes138639
SOURCE (Princeton)PTPDC1
Genetics Home Reference (NIH)PTPDC1
Genomic and cartography
GoldenPath hg19 (UCSC)PTPDC1  -     chr9:96846711-96872138 +  9q22.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PTPDC1  -     9q22.32   [Description]    (hg38-Dec_2013)
EnsemblPTPDC1 - 9q22.32 [CytoView hg19]  PTPDC1 - 9q22.32 [CytoView hg38]
Mapping of homologs : NCBIPTPDC1 [Mapview hg19]  PTPDC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094631 AK094773 AK124912 AK289692 AK310403
RefSeq transcript (Entrez)NM_001253829 NM_001253830 NM_152422 NM_177995
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)PTPDC1
Cluster EST : UnigeneHs.437943 [ NCBI ]
CGAP (NCI)Hs.437943
Alternative Splicing GalleryENSG00000158079
Gene ExpressionPTPDC1 [ NCBI-GEO ]   PTPDC1 [ EBI - ARRAY_EXPRESS ]   PTPDC1 [ SEEK ]   PTPDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)PTPDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138639
GTEX Portal (Tissue expression)PTPDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2A3K4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2A3K4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2A3K4
Splice isoforms : SwissVarA2A3K4
PhosPhoSitePlusA2A3K4
Domaine pattern : Prosite (Expaxy)TYR_PHOSPHATASE_1 (PS00383)    TYR_PHOSPHATASE_2 (PS50056)   
Domains : Interpro (EBI)Dual-sp_phosphatase_cat-dom    Prot-tyrosine_phosphatase-like    Tyr/Dual-sp_Pase    Tyr_Pase_AS   
Domain families : Pfam (Sanger)DSPc (PF00782)   
Domain families : Pfam (NCBI)pfam00782   
Conserved Domain (NCBI)PTPDC1
DMDM Disease mutations138639
Blocks (Seattle)PTPDC1
SuperfamilyA2A3K4
Human Protein AtlasENSG00000158079
Peptide AtlasA2A3K4
HPRD06689
IPIIPI00376989   IPI00419863   
Protein Interaction databases
DIP (DOE-UCLA)A2A3K4
IntAct (EBI)A2A3K4
FunCoupENSG00000158079
BioGRIDPTPDC1
STRING (EMBL)PTPDC1
ZODIACPTPDC1
Ontologies - Pathways
QuickGOA2A3K4
Ontology : AmiGOprotein tyrosine phosphatase activity  nucleoplasm  protein tyrosine/serine/threonine phosphatase activity  cell projection organization  peptidyl-tyrosine dephosphorylation  
Ontology : EGO-EBIprotein tyrosine phosphatase activity  nucleoplasm  protein tyrosine/serine/threonine phosphatase activity  cell projection organization  peptidyl-tyrosine dephosphorylation  
NDEx NetworkPTPDC1
Atlas of Cancer Signalling NetworkPTPDC1
Wikipedia pathwaysPTPDC1
Orthology - Evolution
OrthoDB138639
GeneTree (enSembl)ENSG00000158079
Phylogenetic Trees/Animal Genes : TreeFamPTPDC1
HOVERGENA2A3K4
HOGENOMA2A3K4
Homologs : HomoloGenePTPDC1
Homology/Alignments : Family Browser (UCSC)PTPDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTPDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTPDC1
dbVarPTPDC1
ClinVarPTPDC1
1000_GenomesPTPDC1 
Exome Variant ServerPTPDC1
ExAC (Exome Aggregation Consortium)PTPDC1 (select the gene name)
Genetic variants : HAPMAP138639
Genomic Variants (DGV)PTPDC1 [DGVbeta]
DECIPHER (Syndromes)9:96846711-96872138  ENSG00000158079
CONAN: Copy Number AnalysisPTPDC1 
Mutations
ICGC Data PortalPTPDC1 
TCGA Data PortalPTPDC1 
Broad Tumor PortalPTPDC1
OASIS PortalPTPDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTPDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTPDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTPDC1
DgiDB (Drug Gene Interaction Database)PTPDC1
DoCM (Curated mutations)PTPDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTPDC1 (select a term)
intoGenPTPDC1
Cancer3DPTPDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPTPDC1
Genetic Testing Registry PTPDC1
NextProtA2A3K4 [Medical]
TSGene138639
GENETestsPTPDC1
Huge Navigator PTPDC1 [HugePedia]
snp3D : Map Gene to Disease138639
BioCentury BCIQPTPDC1
ClinGenPTPDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138639
Chemical/Pharm GKB GenePA134940207
Clinical trialPTPDC1
Miscellaneous
canSAR (ICR)PTPDC1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTPDC1
EVEXPTPDC1
GoPubMedPTPDC1
iHOPPTPDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:40:12 CET 2017

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