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PTPN20 (protein tyrosine phosphatase non-receptor type 20)

Identity

Alias (NCBI)CT126
PTPN20A
PTPN20B
bA142I17.1
bA42B19.1
HGNC (Hugo) PTPN20
HGNC Alias symbbA42B19.1
DKFZP566K0524
bA142I17.1
CT126
HGNC Previous namePTPN20A
 PTPN20B
HGNC Previous nameprotein tyrosine phosphatase, non-receptor type 20A
 protein tyrosine phosphatase, non-receptor type 20B
LocusID (NCBI) 26095
Atlas_Id 77515
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 46911396 and ends at 47002320 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PTPN20   23423
Cards
Entrez_Gene (NCBI)PTPN20    protein tyrosine phosphatase non-receptor type 20
AliasesCT126; PTPN20A; PTPN20B; bA142I17.1; 
bA42B19.1
GeneCards (Weizmann)PTPN20
Ensembl hg19 (Hinxton)ENSG00000204179 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204179 [Gene_View]  ENSG00000204179 [Sequence]  chr10:46911396-47002320 [Contig_View]  PTPN20 [Vega]
ICGC DataPortalENSG00000204179
TCGA cBioPortalPTPN20
AceView (NCBI)PTPN20
Genatlas (Paris)PTPN20
SOURCE (Princeton)PTPN20
Genetics Home Reference (NIH)PTPN20
Genomic and cartography
GoldenPath hg38 (UCSC)PTPN20  -     chr10:46911396-47002320 +  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTPN20  -     10q11.22   [Description]    (hg19-Feb_2009)
GoldenPathPTPN20 - 10q11.22 [CytoView hg19]  PTPN20 - 10q11.22 [CytoView hg38]
ImmunoBaseENSG00000204179
Genome Data Viewer NCBIPTPN20 [Mapview hg19]  
OMIM610630   610631   
Gene and transcription
Genbank (Entrez)AK309922 AL050040 AY704141 AY704142 AY704143
RefSeq transcript (Entrez)NM_001042357 NM_001042358 NM_001042359 NM_001042360 NM_001042361 NM_001042362 NM_001042363 NM_001042364 NM_001042365 NM_001042387 NM_001042389 NM_001042390 NM_001042391 NM_001042392 NM_001042393 NM_001042394 NM_001042395 NM_001042396 NM_001042397 NM_001320681 NM_001320682 NM_001320683 NM_001320684 NM_001320685 NM_001320686 NM_001320688 NM_001320689 NM_001320690 NM_001320691 NM_001352521 NM_001352522 NM_001352523 NM_001352524 NM_001352525 NM_001352526 NM_001352527 NM_001352528 NM_001352529 NM_001352530 NM_001352531 NM_001352532 NM_001352533 NM_001352534 NM_001352535 NM_001352536 NM_001352537 NM_001352538 NM_001352539 NM_001352540 NM_001352541 NM_001352542 NM_001352543 NM_001352544 NM_001352545 NM_001352546 NM_001352547 NM_001352548 NM_001352549 NM_001352550 NM_001352551 NM_001352552 NM_001352553 NM_001352554 NM_001352555 NM_015605
Consensus coding sequences : CCDS (NCBI)PTPN20
Gene ExpressionPTPN20 [ NCBI-GEO ]   PTPN20 [ EBI - ARRAY_EXPRESS ]   PTPN20 [ SEEK ]   PTPN20 [ MEM ]
Gene Expression Viewer (FireBrowse)PTPN20 [ Firebrowse - Broad ]
GenevisibleExpression of PTPN20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26095
GTEX Portal (Tissue expression)PTPN20
Human Protein AtlasENSG00000204179-PTPN20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PTPN20
Human Protein Atlas [tissue]ENSG00000204179-PTPN20 [tissue]
HPRD10898
Protein Interaction databases
BioGRIDPTPN20
STRING (EMBL)PTPN20
ZODIACPTPN20
Ontologies - Pathways
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPTPN20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:17:38 CEST 2021

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