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PTPRCAP (protein tyrosine phosphatase, receptor type C associated protein)

Identity

Alias_symbol (synonym)LPAP
CD45-AP
Other alias
HGNC (Hugo) PTPRCAP
LocusID (NCBI) 5790
Atlas_Id 41926
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67202981 and ends at 67205153 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTPRCAP   9667
Cards
Entrez_Gene (NCBI)PTPRCAP  5790  protein tyrosine phosphatase, receptor type C associated protein
AliasesCD45-AP; LPAP
GeneCards (Weizmann)PTPRCAP
Ensembl hg19 (Hinxton)ENSG00000213402 [Gene_View]  chr11:67202981-67205153 [Contig_View]  PTPRCAP [Vega]
Ensembl hg38 (Hinxton)ENSG00000213402 [Gene_View]  chr11:67202981-67205153 [Contig_View]  PTPRCAP [Vega]
ICGC DataPortalENSG00000213402
TCGA cBioPortalPTPRCAP
AceView (NCBI)PTPRCAP
Genatlas (Paris)PTPRCAP
WikiGenes5790
SOURCE (Princeton)PTPRCAP
Genetics Home Reference (NIH)PTPRCAP
Genomic and cartography
GoldenPath hg19 (UCSC)PTPRCAP  -     chr11:67202981-67205153 -  11q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PTPRCAP  -     11q13.2   [Description]    (hg38-Dec_2013)
EnsemblPTPRCAP - 11q13.2 [CytoView hg19]  PTPRCAP - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIPTPRCAP [Mapview hg19]  PTPRCAP [Mapview hg38]
OMIM601577   
Gene and transcription
Genbank (Entrez)AK312022 BC113859 BC114467 CR457429 X81422
RefSeq transcript (Entrez)NM_005608
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)PTPRCAP
Cluster EST : UnigeneHs.155975 [ NCBI ]
CGAP (NCI)Hs.155975
Alternative Splicing GalleryENSG00000213402
Gene ExpressionPTPRCAP [ NCBI-GEO ]   PTPRCAP [ EBI - ARRAY_EXPRESS ]   PTPRCAP [ SEEK ]   PTPRCAP [ MEM ]
Gene Expression Viewer (FireBrowse)PTPRCAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5790
GTEX Portal (Tissue expression)PTPRCAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14761   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14761  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14761
Splice isoforms : SwissVarQ14761
PhosPhoSitePlusQ14761
Domains : Interpro (EBI)PTPRCAP   
Domain families : Pfam (Sanger)PTPRCAP (PF15713)   
Domain families : Pfam (NCBI)pfam15713   
Conserved Domain (NCBI)PTPRCAP
DMDM Disease mutations5790
Blocks (Seattle)PTPRCAP
SuperfamilyQ14761
Human Protein AtlasENSG00000213402
Peptide AtlasQ14761
HPRD09032
IPIIPI00023786   IPI00983756   
Protein Interaction databases
DIP (DOE-UCLA)Q14761
IntAct (EBI)Q14761
FunCoupENSG00000213402
BioGRIDPTPRCAP
STRING (EMBL)PTPRCAP
ZODIACPTPRCAP
Ontologies - Pathways
QuickGOQ14761
Ontology : AmiGOplasma membrane  defense response  integral component of membrane  
Ontology : EGO-EBIplasma membrane  defense response  integral component of membrane  
NDEx NetworkPTPRCAP
Atlas of Cancer Signalling NetworkPTPRCAP
Wikipedia pathwaysPTPRCAP
Orthology - Evolution
OrthoDB5790
GeneTree (enSembl)ENSG00000213402
Phylogenetic Trees/Animal Genes : TreeFamPTPRCAP
HOVERGENQ14761
HOGENOMQ14761
Homologs : HomoloGenePTPRCAP
Homology/Alignments : Family Browser (UCSC)PTPRCAP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTPRCAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTPRCAP
dbVarPTPRCAP
ClinVarPTPRCAP
1000_GenomesPTPRCAP 
Exome Variant ServerPTPRCAP
ExAC (Exome Aggregation Consortium)PTPRCAP (select the gene name)
Genetic variants : HAPMAP5790
Genomic Variants (DGV)PTPRCAP [DGVbeta]
DECIPHER (Syndromes)11:67202981-67205153  ENSG00000213402
CONAN: Copy Number AnalysisPTPRCAP 
Mutations
ICGC Data PortalPTPRCAP 
TCGA Data PortalPTPRCAP 
Broad Tumor PortalPTPRCAP
OASIS PortalPTPRCAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTPRCAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTPRCAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTPRCAP
DgiDB (Drug Gene Interaction Database)PTPRCAP
DoCM (Curated mutations)PTPRCAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTPRCAP (select a term)
intoGenPTPRCAP
Cancer3DPTPRCAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601577   
Orphanet
MedgenPTPRCAP
Genetic Testing Registry PTPRCAP
NextProtQ14761 [Medical]
TSGene5790
GENETestsPTPRCAP
Huge Navigator PTPRCAP [HugePedia]
snp3D : Map Gene to Disease5790
BioCentury BCIQPTPRCAP
ClinGenPTPRCAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5790
Chemical/Pharm GKB GenePA34012
Clinical trialPTPRCAP
Miscellaneous
canSAR (ICR)PTPRCAP (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTPRCAP
EVEXPTPRCAP
GoPubMedPTPRCAP
iHOPPTPRCAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:16:14 CEST 2017

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