Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PTPRD-AS2 (PTPRD antisense RNA 2 (head to head))

Identity

Other alias-
HGNC (Hugo) PTPRD-AS2
LocusID (NCBI) 101929428
Atlas_Id 72391
Location 9p23  [Link to chromosome band 9p23]
Location_base_pair Starts at 10613206 and ends at 10620420 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTPRD-AS2   49754
Cards
Entrez_Gene (NCBI)PTPRD-AS2  101929428  PTPRD antisense RNA 2 (head to head)
Aliases
GeneCards (Weizmann)PTPRD-AS2
Ensembl hg19 (Hinxton)ENSG00000226717 [Gene_View]  chr9:10613206-10620420 [Contig_View]  PTPRD-AS2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000226717 [Gene_View]  chr9:10613206-10620420 [Contig_View]  PTPRD-AS2 [Vega]
ICGC DataPortalENSG00000226717
TCGA cBioPortalPTPRD-AS2
AceView (NCBI)PTPRD-AS2
Genatlas (Paris)PTPRD-AS2
WikiGenes101929428
SOURCE (Princeton)PTPRD-AS2
Genetics Home Reference (NIH)PTPRD-AS2
Genomic and cartography
GoldenPath hg19 (UCSC)PTPRD-AS2  -     chr9:10613206-10620420 +  9p23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PTPRD-AS2  -     9p23   [Description]    (hg38-Dec_2013)
EnsemblPTPRD-AS2 - 9p23 [CytoView hg19]  PTPRD-AS2 - 9p23 [CytoView hg38]
Mapping of homologs : NCBIPTPRD-AS2 [Mapview hg19]  PTPRD-AS2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC045688 HG501890
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)PTPRD-AS2
Cluster EST : UnigeneHs.434446 [ NCBI ]
CGAP (NCI)Hs.434446
Alternative Splicing GalleryENSG00000226717
Gene ExpressionPTPRD-AS2 [ NCBI-GEO ]   PTPRD-AS2 [ EBI - ARRAY_EXPRESS ]   PTPRD-AS2 [ SEEK ]   PTPRD-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)PTPRD-AS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929428
GTEX Portal (Tissue expression)PTPRD-AS2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PTPRD-AS2
DMDM Disease mutations101929428
Blocks (Seattle)PTPRD-AS2
Human Protein AtlasENSG00000226717
Protein Interaction databases
FunCoupENSG00000226717
BioGRIDPTPRD-AS2
STRING (EMBL)PTPRD-AS2
ZODIACPTPRD-AS2
Ontologies - Pathways
Huge Navigator PTPRD-AS2 [HugePedia]
snp3D : Map Gene to Disease101929428
BioCentury BCIQPTPRD-AS2
ClinGenPTPRD-AS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929428
Clinical trialPTPRD-AS2
Miscellaneous
canSAR (ICR)PTPRD-AS2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTPRD-AS2
EVEXPTPRD-AS2
GoPubMedPTPRD-AS2
iHOPPTPRD-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:12 CET 2017

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