PTPRD (protein tyrosine phosphatase, receptor type, D)

Identity

Other names	HPTP
	HPTP-DELTA
	HPTPD
	MGC119750
	MGC119751
	MGC119752
	MGC119753
	PTPD
	R-PTP-DELTA
HGNC	PTPRD
Location	9p24.1-p23
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	PTPRD   9668
Entrez_Gene	PTPRD  5789  protein tyrosine phosphatase, receptor type, D
	Cards
GeneCards	PTPRD
Ensembl	PTPRD [Search_View]   ENSG00000153707 [Gene_View]
Genatlas	PTPRD
GeneLynx	PTPRD
eGenome	PTPRD
euGene	5789
	Genomic and cartography
GoldenPath	PTPRD  -     chr9:8304246-10602509 -  9p24.1   [Description]    (hg18-March_2006)
Ensembl	PTPRD - 9p24.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	PTPRD
	Gene and transcription
Genbank	AB208869 [ ENTREZ ]
Genbank	AB211400 [ ENTREZ ]
Genbank	BC028038 [ ENTREZ ]
Genbank	BC037801 [ ENTREZ ]
Genbank	BC045786 [ ENTREZ ]
RefSeq	NM_001040712 [ SRS ]    NM_001040712 [ ENTREZ ]
RefSeq	NM_002839 [ SRS ]    NM_002839 [ ENTREZ ]
RefSeq	NM_130391 [ SRS ]    NM_130391 [ ENTREZ ]
RefSeq	NM_130392 [ SRS ]    NM_130392 [ ENTREZ ]
RefSeq	NM_130393 [ SRS ]    NM_130393 [ ENTREZ ]
RefSeq	AC_000052 [ SRS ]    AC_000052 [ ENTREZ ]
RefSeq	AC_000141 [ SRS ]    AC_000141 [ ENTREZ ]
RefSeq	NC_000009 [ SRS ]    NC_000009 [ ENTREZ ]
RefSeq	NT_008413 [ SRS ]    NT_008413 [ ENTREZ ]
RefSeq	NW_001839149 [ SRS ]    NW_001839149 [ ENTREZ ]
RefSeq	NW_924062 [ SRS ]    NW_924062 [ ENTREZ ]
AceView	PTPRD AceView - NCBI
Unigene	Hs.446083 [ SRS ]    Hs.446083 [ NCBI ]     HS446083 [ spliceNest ]
Fast-db	2278 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P23468 [ SRS]    P23468 [ EXPASY ]     P23468 [ INTERPRO ]     P23468 [ UNIPROT ]
Prosite	PS50853 FN3 [ SRS ]    PS50853 FN3 [ Expasy ]
Prosite	PS50835 IG_LIKE [ SRS ]    PS50835 IG_LIKE [ Expasy ]
Prosite	PS00383 TYR_PHOSPHATASE_1 [ SRS ]    PS00383 TYR_PHOSPHATASE_1 [ Expasy ]
Prosite	PS50056 TYR_PHOSPHATASE_2 [ SRS ]    PS50056 TYR_PHOSPHATASE_2 [ Expasy ]
Prosite	PS50055 TYR_PHOSPHATASE_PTP [ SRS ]    PS50055 TYR_PHOSPHATASE_PTP [ Expasy ]
Interpro	IPR008957 Fibronectin_typ-III-like_fold [ SRS ]    IPR008957 Fibronectin_typ-III-like_fold [ EBI ]
Interpro	IPR003961 FN_III [ SRS ]    IPR003961 FN_III [ EBI ]
Interpro	IPR003962 FnIII_subd [ SRS ]    IPR003962 FnIII_subd [ EBI ]
Interpro	IPR013151 Ig [ SRS ]    IPR013151 Ig [ EBI ]
Interpro	IPR007110 Ig-like [ SRS ]    IPR007110 Ig-like [ EBI ]
Interpro	IPR013783 Ig-like_fold [ SRS ]    IPR013783 Ig-like_fold [ EBI ]
Interpro	IPR013098 Ig_I-set [ SRS ]    IPR013098 Ig_I-set [ EBI ]
Interpro	IPR003598 Ig_sub2 [ SRS ]    IPR003598 Ig_sub2 [ EBI ]
Interpro	IPR000387 Tyr_Pase [ SRS ]    IPR000387 Tyr_Pase [ EBI ]
Interpro	IPR016130 Tyr_Pase_AS [ SRS ]    IPR016130 Tyr_Pase_AS [ EBI ]
Interpro	IPR000242 Tyr_Pase_rcpt/non-rcpt [ SRS ]    IPR000242 Tyr_Pase_rcpt/non-rcpt [ EBI ]
CluSTr	P23468
Pfam	PF00041 fn3 [ SRS ]    PF00041 fn3 [ Sanger ]    pfam00041 [ NCBI-CDD ]
Pfam	PF07679 I-set [ SRS ]    PF07679 I-set [ Sanger ]    pfam07679 [ NCBI-CDD ]
Pfam	PF00047 ig [ SRS ]    PF00047 ig [ Sanger ]    pfam00047 [ NCBI-CDD ]
Pfam	PF00102 Y_phosphatase [ SRS ]    PF00102 Y_phosphatase [ Sanger ]    pfam00102 [ NCBI-CDD ]
Smart	SM00060 FN3 [EMBL]
Smart	SM00408 IGc2 [EMBL]
Smart	SM00194 PTPc [EMBL]
Blocks	P23468
PDB	1X5Z [ SRS ]    1X5Z [ PdbSum ],   1X5Z [ IMB ]   1X5Z [ RSDB ]
PDB	2DLH [ SRS ]    2DLH [ PdbSum ],   2DLH [ IMB ]   2DLH [ RSDB ]
HPRD	03358
	Protein Interaction databases
DIP	P23468
IntAct	P23468
	Polymorphism : SNP, mutations, diseases
OMIM	601598    [ map ]
GENECLINICS	601598
SNP	PTPRD [dbSNP-NCBI]
SNP	NM_001040712 [SNP-NCI]
SNP	NM_002839 [SNP-NCI]
SNP	NM_130391 [SNP-NCI]
SNP	NM_130392 [SNP-NCI]
SNP	NM_130393 [SNP-NCI]
SNP	PTPRD [GeneSNPs - Utah]  PTPRD] [HGBASE - SRS]
HAPMAP	PTPRD [HAPMAP]
COSMIC	PTPRD [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	PTPRD
	General knowledge
Family Browser	PTPRD [UCSC Family Browser]
SOURCE	NM_001040712
SOURCE	NM_002839
SOURCE	NM_130391
SOURCE	NM_130392
SOURCE	NM_130393
SMD	Hs.446083
SAGE	Hs.446083
Enzyme	3.1.3.48 [ Enzyme-Expasy ]   3.1.3.48 [ Enzyme-SRS ]   3.1.3.48 [ IntEnz-EBI ]   3.1.3.48 [ BRENDA ]   3.1.3.48 [ KEGG ]   3.1.3.48 [ WIT ]
GO	protein tyrosine phosphatase activity [Amigo]  protein tyrosine phosphatase activity
GO	receptor activity [Amigo]  receptor activity
GO	transmembrane receptor protein tyrosine phosphatase activity [Amigo]  transmembrane receptor protein tyrosine phosphatase activity
GO	integral to plasma membrane [Amigo]  integral to plasma membrane
GO	protein amino acid dephosphorylation [Amigo]  protein amino acid dephosphorylation
GO	protein amino acid dephosphorylation [Amigo]  protein amino acid dephosphorylation
GO	transmembrane receptor protein tyrosine phosphatase signaling pathway [Amigo]  transmembrane receptor protein tyrosine phosphatase signaling pathway
GO	membrane [Amigo]  membrane
GO	hydrolase activity [Amigo]  hydrolase activity
GO	phosphatase activity [Amigo]  phosphatase activity
PubGene	PTPRD
TreeFam	PTPRD
CTD	5789 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	PTPRD Related clones (RZPD - Berlin)
	PubMed
PubMed	18 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:27:32 2008