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PTPRH (protein tyrosine phosphatase, receptor type H)

Identity

Alias_symbol (synonym)SAP-1
Other aliasR-PTP-H
SAP1
HGNC (Hugo) PTPRH
LocusID (NCBI) 5794
Atlas_Id 41931
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55692615 and ends at 55720874 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTPRH   9672
Cards
Entrez_Gene (NCBI)PTPRH  5794  protein tyrosine phosphatase, receptor type H
AliasesR-PTP-H; SAP1
GeneCards (Weizmann)PTPRH
Ensembl hg19 (Hinxton)ENSG00000080031 [Gene_View]  chr19:55692615-55720874 [Contig_View]  PTPRH [Vega]
Ensembl hg38 (Hinxton)ENSG00000080031 [Gene_View]  chr19:55692615-55720874 [Contig_View]  PTPRH [Vega]
ICGC DataPortalENSG00000080031
TCGA cBioPortalPTPRH
AceView (NCBI)PTPRH
Genatlas (Paris)PTPRH
WikiGenes5794
SOURCE (Princeton)PTPRH
Genetics Home Reference (NIH)PTPRH
Genomic and cartography
GoldenPath hg19 (UCSC)PTPRH  -     chr19:55692615-55720874 -  19q13.42   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PTPRH  -     19q13.42   [Description]    (hg38-Dec_2013)
EnsemblPTPRH - 19q13.42 [CytoView hg19]  PTPRH - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIPTPRH [Mapview hg19]  PTPRH [Mapview hg38]
OMIM602510   
Gene and transcription
Genbank (Entrez)AA573849 AK097257 BC111715 BC111716 D15049
RefSeq transcript (Entrez)NM_001161440 NM_002842
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)PTPRH
Cluster EST : UnigeneHs.179770 [ NCBI ]
CGAP (NCI)Hs.179770
Alternative Splicing GalleryENSG00000080031
Gene ExpressionPTPRH [ NCBI-GEO ]   PTPRH [ EBI - ARRAY_EXPRESS ]   PTPRH [ SEEK ]   PTPRH [ MEM ]
Gene Expression Viewer (FireBrowse)PTPRH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5794
GTEX Portal (Tissue expression)PTPRH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD43   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HD43  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HD43
Splice isoforms : SwissVarQ9HD43
Catalytic activity : Enzyme3.1.3.48 [ Enzyme-Expasy ]   3.1.3.483.1.3.48 [ IntEnz-EBI ]   3.1.3.48 [ BRENDA ]   3.1.3.48 [ KEGG ]   
PhosPhoSitePlusQ9HD43
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    TYR_PHOSPHATASE_1 (PS00383)    TYR_PHOSPHATASE_2 (PS50056)    TYR_PHOSPHATASE_PTP (PS50055)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold    Prot-tyrosine_phosphatase-like    PTPase_domain    R-PTP-H    Tyr_Pase_AS    TYR_PHOSPHATASE_dom   
Domain families : Pfam (Sanger)fn3 (PF00041)    Y_phosphatase (PF00102)   
Domain families : Pfam (NCBI)pfam00041    pfam00102   
Domain families : Smart (EMBL)FN3 (SM00060)  PTPc (SM00194)  
Conserved Domain (NCBI)PTPRH
DMDM Disease mutations5794
Blocks (Seattle)PTPRH
SuperfamilyQ9HD43
Human Protein AtlasENSG00000080031
Peptide AtlasQ9HD43
HPRD03942
IPIIPI00718801   IPI00760988   
Protein Interaction databases
DIP (DOE-UCLA)Q9HD43
IntAct (EBI)Q9HD43
FunCoupENSG00000080031
BioGRIDPTPRH
STRING (EMBL)PTPRH
ZODIACPTPRH
Ontologies - Pathways
QuickGOQ9HD43
Ontology : AmiGOtransmembrane receptor protein tyrosine phosphatase activity  protein binding  cytoplasm  integral component of plasma membrane  protein dephosphorylation  apoptotic process  peptidyl-tyrosine dephosphorylation  peptidyl-tyrosine dephosphorylation  
Ontology : EGO-EBItransmembrane receptor protein tyrosine phosphatase activity  protein binding  cytoplasm  integral component of plasma membrane  protein dephosphorylation  apoptotic process  peptidyl-tyrosine dephosphorylation  peptidyl-tyrosine dephosphorylation  
NDEx NetworkPTPRH
Atlas of Cancer Signalling NetworkPTPRH
Wikipedia pathwaysPTPRH
Orthology - Evolution
OrthoDB5794
GeneTree (enSembl)ENSG00000080031
Phylogenetic Trees/Animal Genes : TreeFamPTPRH
HOVERGENQ9HD43
HOGENOMQ9HD43
Homologs : HomoloGenePTPRH
Homology/Alignments : Family Browser (UCSC)PTPRH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTPRH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTPRH
dbVarPTPRH
ClinVarPTPRH
1000_GenomesPTPRH 
Exome Variant ServerPTPRH
ExAC (Exome Aggregation Consortium)PTPRH (select the gene name)
Genetic variants : HAPMAP5794
Genomic Variants (DGV)PTPRH [DGVbeta]
DECIPHER (Syndromes)19:55692615-55720874  ENSG00000080031
CONAN: Copy Number AnalysisPTPRH 
Mutations
ICGC Data PortalPTPRH 
TCGA Data PortalPTPRH 
Broad Tumor PortalPTPRH
OASIS PortalPTPRH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTPRH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTPRH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTPRH
DgiDB (Drug Gene Interaction Database)PTPRH
DoCM (Curated mutations)PTPRH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTPRH (select a term)
intoGenPTPRH
Cancer3DPTPRH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602510   
Orphanet
MedgenPTPRH
Genetic Testing Registry PTPRH
NextProtQ9HD43 [Medical]
TSGene5794
GENETestsPTPRH
Huge Navigator PTPRH [HugePedia]
snp3D : Map Gene to Disease5794
BioCentury BCIQPTPRH
ClinGenPTPRH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5794
Chemical/Pharm GKB GenePA34017
Clinical trialPTPRH
Miscellaneous
canSAR (ICR)PTPRH (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTPRH
EVEXPTPRH
GoPubMedPTPRH
iHOPPTPRH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:23:39 CET 2017

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