PTPRS (protein tyrosine phosphatase, receptor type, S)

Identity

Other names	PTPSIGMA
HGNC	PTPRS
Location	19p13.3
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	PTPRS   9681
Entrez_Gene	PTPRS  5802  protein tyrosine phosphatase, receptor type, S
	Cards
GeneCards	PTPRS
Ensembl	PTPRS [Search_View]   ENSG00000105426 [Gene_View]
Genatlas	PTPRS
GeneLynx	PTPRS
eGenome	PTPRS
euGene	5802
	Genomic and cartography
GoldenPath	PTPRS  -  19p13.3   chr19:5156519-5291814 -  19p13.3   [Description]    (hg18-March_2006)
Ensembl	PTPRS - 19p13.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	PTPRS
	Gene and transcription
Genbank	AB209333 [ ENTREZ ]
Genbank	BC029496 [ ENTREZ ]
Genbank	BC104812 [ ENTREZ ]
Genbank	BC148297 [ ENTREZ ]
Genbank	BI461316 [ ENTREZ ]
RefSeq	NM_002850 [ SRS ]    NM_002850 [ ENTREZ ]
RefSeq	NM_130853 [ SRS ]    NM_130853 [ ENTREZ ]
RefSeq	NM_130854 [ SRS ]    NM_130854 [ ENTREZ ]
RefSeq	NM_130855 [ SRS ]    NM_130855 [ ENTREZ ]
RefSeq	AC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
RefSeq	AC_000151 [ SRS ]    AC_000151 [ ENTREZ ]
RefSeq	NC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
RefSeq	NT_011255 [ SRS ]    NT_011255 [ ENTREZ ]
RefSeq	NW_001838477 [ SRS ]    NW_001838477 [ ENTREZ ]
RefSeq	NW_927173 [ SRS ]    NW_927173 [ ENTREZ ]
AceView	PTPRS AceView - NCBI
Unigene	Hs.712625 [ SRS ]    Hs.712625 [ NCBI ]     HS712625 [ spliceNest ]
Fast-db	3130 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q13332 [ SRS]    Q13332 [ EXPASY ]     Q13332 [ INTERPRO ]     Q13332 [ UNIPROT ]
Prosite	PS50853 FN3 [ SRS ]    PS50853 FN3 [ Expasy ]
Prosite	PS50835 IG_LIKE [ SRS ]    PS50835 IG_LIKE [ Expasy ]
Prosite	PS00383 TYR_PHOSPHATASE_1 [ SRS ]    PS00383 TYR_PHOSPHATASE_1 [ Expasy ]
Prosite	PS50056 TYR_PHOSPHATASE_2 [ SRS ]    PS50056 TYR_PHOSPHATASE_2 [ Expasy ]
Prosite	PS50055 TYR_PHOSPHATASE_PTP [ SRS ]    PS50055 TYR_PHOSPHATASE_PTP [ Expasy ]
Interpro	IPR008957 Fibronectin_typ-III-like_fold [ SRS ]    IPR008957 Fibronectin_typ-III-like_fold [ EBI ]
Interpro	IPR003961 FN_III [ SRS ]    IPR003961 FN_III [ EBI ]
Interpro	IPR003962 FnIII_subd [ SRS ]    IPR003962 FnIII_subd [ EBI ]
Interpro	IPR013151 Ig [ SRS ]    IPR013151 Ig [ EBI ]
Interpro	IPR007110 Ig-like [ SRS ]    IPR007110 Ig-like [ EBI ]
Interpro	IPR013783 Ig-like_fold [ SRS ]    IPR013783 Ig-like_fold [ EBI ]
Interpro	IPR013098 Ig_I-set [ SRS ]    IPR013098 Ig_I-set [ EBI ]
Interpro	IPR003598 Ig_sub2 [ SRS ]    IPR003598 Ig_sub2 [ EBI ]
Interpro	IPR000387 Tyr_Pase [ SRS ]    IPR000387 Tyr_Pase [ EBI ]
Interpro	IPR016130 Tyr_Pase_AS [ SRS ]    IPR016130 Tyr_Pase_AS [ EBI ]
Interpro	IPR000242 Tyr_Pase_rcpt/non-rcpt [ SRS ]    IPR000242 Tyr_Pase_rcpt/non-rcpt [ EBI ]
CluSTr	Q13332
Pfam	PF00041 fn3 [ SRS ]    PF00041 fn3 [ Sanger ]    pfam00041 [ NCBI-CDD ]
Pfam	PF07679 I-set [ SRS ]    PF07679 I-set [ Sanger ]    pfam07679 [ NCBI-CDD ]
Pfam	PF00047 ig [ SRS ]    PF00047 ig [ Sanger ]    pfam00047 [ NCBI-CDD ]
Pfam	PF00102 Y_phosphatase [ SRS ]    PF00102 Y_phosphatase [ Sanger ]    pfam00102 [ NCBI-CDD ]
Smart	SM00060 FN3 [EMBL]
Smart	SM00408 IGc2 [EMBL]
Smart	SM00194 PTPc [EMBL]
Blocks	Q13332
PDB	2FH7 [ SRS ]    2FH7 [ PdbSum ],   2FH7 [ IMB ]   2FH7 [ RSDB ]
HPRD	03344
	Protein Interaction databases
DIP	Q13332
IntAct	Q13332
	Polymorphism : SNP, mutations, diseases
OMIM	601576    [ map ]
GENECLINICS	601576
SNP	PTPRS [dbSNP-NCBI]
SNP	NM_002850 [SNP-NCI]
SNP	NM_130853 [SNP-NCI]
SNP	NM_130854 [SNP-NCI]
SNP	NM_130855 [SNP-NCI]
SNP	PTPRS [GeneSNPs - Utah]  PTPRS] [HGBASE - SRS]
HAPMAP	PTPRS [HAPMAP]
COSMIC	PTPRS [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	PTPRS
	General knowledge
Family Browser	PTPRS [UCSC Family Browser]
SOURCE	NM_002850
SOURCE	NM_130853
SOURCE	NM_130854
SOURCE	NM_130855
SMD	Hs.712625
SAGE	Hs.712625
Enzyme	3.1.3.48 [ Enzyme-Expasy ]   3.1.3.48 [ Enzyme-SRS ]   3.1.3.48 [ IntEnz-EBI ]   3.1.3.48 [ BRENDA ]   3.1.3.48 [ KEGG ]   3.1.3.48 [ WIT ]
GO	protein tyrosine phosphatase activity [Amigo]  protein tyrosine phosphatase activity
GO	receptor activity [Amigo]  receptor activity
GO	transmembrane receptor protein tyrosine phosphatase activity [Amigo]  transmembrane receptor protein tyrosine phosphatase activity
GO	protein binding [Amigo]  protein binding
GO	integral to plasma membrane [Amigo]  integral to plasma membrane
GO	protein amino acid dephosphorylation [Amigo]  protein amino acid dephosphorylation
GO	cell adhesion [Amigo]  cell adhesion
GO	membrane [Amigo]  membrane
GO	hydrolase activity [Amigo]  hydrolase activity
GO	phosphatase activity [Amigo]  phosphatase activity
PubGene	PTPRS
TreeFam	PTPRS
CTD	5802 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	PTPRS Related clones (RZPD - Berlin)
	PubMed
PubMed	23 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:27:36 2008