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PTPRT (protein tyrosine phosphatase receptor type T)

Identity

Alias (NCBI)R-PTP-T
RPTP-rho
RPTPrho
HGNC (Hugo) PTPRT
HGNC Alias symbRPTPrho
KIAA0283
LocusID (NCBI) 11122
Atlas_Id 41939
Location 20q12  [Link to chromosome band 20q12]
Location_base_pair Starts at 42072756 and ends at 43189906 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIGU (20q11.22) / PTPRT (20q12)PTPRT (20q12) / EXD2 (14q24.1)PTPRT (20q12) / NCOA3 (20q13.12)
PTPRT (20q12) / PTPRT (20q12)PTPRT (20q12) / ZCCHC8 (12q24.31)WAPL (10q23.2) / PTPRT (20q12)
PIGU 20q11.22 / PTPRT 20q12PTPRT 20q12 / EXD2 14q24.1PTPRT 20q12 / NCOA3 20q13.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PTPRT   9682
Cards
Entrez_Gene (NCBI)PTPRT    protein tyrosine phosphatase receptor type T
AliasesR-PTP-T; RPTP-rho; RPTPrho
GeneCards (Weizmann)PTPRT
Ensembl hg19 (Hinxton)ENSG00000196090 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196090 [Gene_View]  ENSG00000196090 [Sequence]  chr20:42072756-43189906 [Contig_View]  PTPRT [Vega]
ICGC DataPortalENSG00000196090
TCGA cBioPortalPTPRT
AceView (NCBI)PTPRT
Genatlas (Paris)PTPRT
SOURCE (Princeton)PTPRT
Genetics Home Reference (NIH)PTPRT
Genomic and cartography
GoldenPath hg38 (UCSC)PTPRT  -     chr20:42072756-43189906 -  20q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTPRT  -     20q12   [Description]    (hg19-Feb_2009)
GoldenPathPTPRT - 20q12 [CytoView hg19]  PTPRT - 20q12 [CytoView hg38]
ImmunoBaseENSG00000196090
Genome Data Viewer NCBIPTPRT [Mapview hg19]  
OMIM608712   
Gene and transcription
Genbank (Entrez)AB006621 AF043644 AL707728 BC153300 DA791336
RefSeq transcript (Entrez)NM_001394024 NM_001394025 NM_001394026 NM_007050 NM_133170
Consensus coding sequences : CCDS (NCBI)PTPRT
Gene ExpressionPTPRT [ NCBI-GEO ]   PTPRT [ EBI - ARRAY_EXPRESS ]   PTPRT [ SEEK ]   PTPRT [ MEM ]
Gene Expression Viewer (FireBrowse)PTPRT [ Firebrowse - Broad ]
GenevisibleExpression of PTPRT in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11122
GTEX Portal (Tissue expression)PTPRT
Human Protein AtlasENSG00000196090-PTPRT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PTPRT
Human Protein Atlas [tissue]ENSG00000196090-PTPRT [tissue]
HPRD06690
Protein Interaction databases
BioGRIDPTPRT
STRING (EMBL)PTPRT
ZODIACPTPRT
Ontologies - Pathways
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPTPRT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:27:33 CEST 2021

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