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PTRH1 (peptidyl-tRNA hydrolase 1 homolog)

Identity

Alias_namesC9orf115
chromosome 9 open reading frame 115
peptidyl-tRNA hydrolase 1 hoeolog$(s. cerevisiae)
Alias_symbol (synonym)PTH1
Other alias
HGNC (Hugo) PTRH1
LocusID (NCBI) 138428
Atlas_Id 72395
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 127713663 and ends at 127715676 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PTRH1   27039
Cards
Entrez_Gene (NCBI)PTRH1  138428  peptidyl-tRNA hydrolase 1 homolog
AliasesC9orf115; PTH1
GeneCards (Weizmann)PTRH1
Ensembl hg19 (Hinxton)ENSG00000187024 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187024 [Gene_View]  chr9:127713663-127715676 [Contig_View]  PTRH1 [Vega]
ICGC DataPortalENSG00000187024
TCGA cBioPortalPTRH1
AceView (NCBI)PTRH1
Genatlas (Paris)PTRH1
WikiGenes138428
SOURCE (Princeton)PTRH1
Genetics Home Reference (NIH)PTRH1
Genomic and cartography
GoldenPath hg38 (UCSC)PTRH1  -     chr9:127713663-127715676 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTRH1  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblPTRH1 - 9q34.11 [CytoView hg19]  PTRH1 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIPTRH1 [Mapview hg19]  PTRH1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090922 AV709373 BC015230 BC032117 BC047012
RefSeq transcript (Entrez)NM_001002913 NM_001345977 NM_001345978 NM_001345979 NM_001345980
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTRH1
Cluster EST : UnigeneHs.653265 [ NCBI ]
CGAP (NCI)Hs.653265
Alternative Splicing GalleryENSG00000187024
Gene ExpressionPTRH1 [ NCBI-GEO ]   PTRH1 [ EBI - ARRAY_EXPRESS ]   PTRH1 [ SEEK ]   PTRH1 [ MEM ]
Gene Expression Viewer (FireBrowse)PTRH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138428
GTEX Portal (Tissue expression)PTRH1
Human Protein AtlasENSG00000187024-PTRH1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86Y79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86Y79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86Y79
Splice isoforms : SwissVarQ86Y79
PhosPhoSitePlusQ86Y79
Domaine pattern : Prosite (Expaxy)PEPT_TRNA_HYDROL_2 (PS01196)   
Domains : Interpro (EBI)Pept_tRNA_hydro    Pept_tRNA_hydro_CS   
Domain families : Pfam (Sanger)Pept_tRNA_hydro (PF01195)   
Domain families : Pfam (NCBI)pfam01195   
Conserved Domain (NCBI)PTRH1
DMDM Disease mutations138428
Blocks (Seattle)PTRH1
SuperfamilyQ86Y79
Human Protein Atlas [tissue]ENSG00000187024-PTRH1 [tissue]
Peptide AtlasQ86Y79
HPRD12936
IPIIPI00048572   IPI00945330   
Protein Interaction databases
DIP (DOE-UCLA)Q86Y79
IntAct (EBI)Q86Y79
FunCoupENSG00000187024
BioGRIDPTRH1
STRING (EMBL)PTRH1
ZODIACPTRH1
Ontologies - Pathways
QuickGOQ86Y79
Ontology : AmiGORNA binding  aminoacyl-tRNA hydrolase activity  protein binding  mitochondrion  mitochondrial translation  
Ontology : EGO-EBIRNA binding  aminoacyl-tRNA hydrolase activity  protein binding  mitochondrion  mitochondrial translation  
NDEx NetworkPTRH1
Atlas of Cancer Signalling NetworkPTRH1
Wikipedia pathwaysPTRH1
Orthology - Evolution
OrthoDB138428
GeneTree (enSembl)ENSG00000187024
Phylogenetic Trees/Animal Genes : TreeFamPTRH1
HOVERGENQ86Y79
HOGENOMQ86Y79
Homologs : HomoloGenePTRH1
Homology/Alignments : Family Browser (UCSC)PTRH1
Gene fusions - Rearrangements
Fusion: Tumor Portal PTRH1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTRH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTRH1
dbVarPTRH1
ClinVarPTRH1
1000_GenomesPTRH1 
Exome Variant ServerPTRH1
ExAC (Exome Aggregation Consortium)ENSG00000187024
GNOMAD BrowserENSG00000187024
Genetic variants : HAPMAP138428
Genomic Variants (DGV)PTRH1 [DGVbeta]
DECIPHERPTRH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTRH1 
Mutations
ICGC Data PortalPTRH1 
TCGA Data PortalPTRH1 
Broad Tumor PortalPTRH1
OASIS PortalPTRH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTRH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTRH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch PTRH1
DgiDB (Drug Gene Interaction Database)PTRH1
DoCM (Curated mutations)PTRH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTRH1 (select a term)
intoGenPTRH1
Cancer3DPTRH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPTRH1
Genetic Testing Registry PTRH1
NextProtQ86Y79 [Medical]
TSGene138428
GENETestsPTRH1
Target ValidationPTRH1
Huge Navigator PTRH1 [HugePedia]
snp3D : Map Gene to Disease138428
BioCentury BCIQPTRH1
ClinGenPTRH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138428
Chemical/Pharm GKB GenePA134917129
Clinical trialPTRH1
Miscellaneous
canSAR (ICR)PTRH1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTRH1
EVEXPTRH1
GoPubMedPTRH1
iHOPPTRH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:24:06 CET 2017

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