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PTRHD1 (peptidyl-tRNA hydrolase domain containing 1)

Identity

Alias (NCBI)C2orf79
HGNC (Hugo) PTRHD1
HGNC Alias symbLOC391356
HGNC Previous nameC2orf79
HGNC Previous namechromosome 2 open reading frame 79
LocusID (NCBI) 391356
Atlas_Id 72396
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 24790267 and ends at 24793382 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PTRHD1   33782
Cards
Entrez_Gene (NCBI)PTRHD1    peptidyl-tRNA hydrolase domain containing 1
AliasesC2orf79
GeneCards (Weizmann)PTRHD1
Ensembl hg19 (Hinxton)ENSG00000184924 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184924 [Gene_View]  ENSG00000184924 [Sequence]  chr2:24790267-24793382 [Contig_View]  PTRHD1 [Vega]
ICGC DataPortalENSG00000184924
TCGA cBioPortalPTRHD1
AceView (NCBI)PTRHD1
Genatlas (Paris)PTRHD1
SOURCE (Princeton)PTRHD1
Genetics Home Reference (NIH)PTRHD1
Genomic and cartography
GoldenPath hg38 (UCSC)PTRHD1  -     chr2:24790267-24793382 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTRHD1  -     2p23.3   [Description]    (hg19-Feb_2009)
GoldenPathPTRHD1 - 2p23.3 [CytoView hg19]  PTRHD1 - 2p23.3 [CytoView hg38]
ImmunoBaseENSG00000184924
Genome Data Viewer NCBIPTRHD1 [Mapview hg19]  
OMIM617342   
Gene and transcription
Genbank (Entrez)BC073803
RefSeq transcript (Entrez)NM_001013663
Consensus coding sequences : CCDS (NCBI)PTRHD1
Gene ExpressionPTRHD1 [ NCBI-GEO ]   PTRHD1 [ EBI - ARRAY_EXPRESS ]   PTRHD1 [ SEEK ]   PTRHD1 [ MEM ]
Gene Expression Viewer (FireBrowse)PTRHD1 [ Firebrowse - Broad ]
GenevisibleExpression of PTRHD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391356
GTEX Portal (Tissue expression)PTRHD1
Human Protein AtlasENSG00000184924-PTRHD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6GMV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6GMV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6GMV3
Catalytic activity : Enzyme3.1.1.29 [ Enzyme-Expasy ]   3.1.1.293.1.1.29 [ IntEnz-EBI ]   3.1.1.29 [ BRENDA ]   3.1.1.29 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ6GMV3
Domains : Interpro (EBI)Pep_tRNA_hydro_II_dom_sf    PTH2    PTRHD1   
Domain families : Pfam (Sanger)PTH2 (PF01981)   
Domain families : Pfam (NCBI)pfam01981   
Conserved Domain (NCBI)PTRHD1
SuperfamilyQ6GMV3
AlphaFold pdb e-kbQ6GMV3   
Human Protein Atlas [tissue]ENSG00000184924-PTRHD1 [tissue]
HPRD18406
Protein Interaction databases
DIP (DOE-UCLA)Q6GMV3
IntAct (EBI)Q6GMV3
BioGRIDPTRHD1
STRING (EMBL)PTRHD1
ZODIACPTRHD1
Ontologies - Pathways
QuickGOQ6GMV3
Ontology : AmiGOaminoacyl-tRNA hydrolase activity  protein binding  
Ontology : EGO-EBIaminoacyl-tRNA hydrolase activity  protein binding  
NDEx NetworkPTRHD1
Atlas of Cancer Signalling NetworkPTRHD1
Wikipedia pathwaysPTRHD1
Orthology - Evolution
OrthoDB391356
GeneTree (enSembl)ENSG00000184924
Phylogenetic Trees/Animal Genes : TreeFamPTRHD1
Homologs : HomoloGenePTRHD1
Homology/Alignments : Family Browser (UCSC)PTRHD1
Gene fusions - Rearrangements
Fusion : QuiverPTRHD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTRHD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTRHD1
dbVarPTRHD1
ClinVarPTRHD1
MonarchPTRHD1
1000_GenomesPTRHD1 
Exome Variant ServerPTRHD1
GNOMAD BrowserENSG00000184924
Varsome BrowserPTRHD1
ACMGPTRHD1 variants
VarityQ6GMV3
Genomic Variants (DGV)PTRHD1 [DGVbeta]
DECIPHERPTRHD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTRHD1 
Mutations
ICGC Data PortalPTRHD1 
TCGA Data PortalPTRHD1 
Broad Tumor PortalPTRHD1
OASIS PortalPTRHD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTRHD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPTRHD1
Mutations and Diseases : HGMDPTRHD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPTRHD1
DgiDB (Drug Gene Interaction Database)PTRHD1
DoCM (Curated mutations)PTRHD1
CIViC (Clinical Interpretations of Variants in Cancer)PTRHD1
Cancer3DPTRHD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617342   
Orphanet
DisGeNETPTRHD1
MedgenPTRHD1
Genetic Testing Registry PTRHD1
NextProtQ6GMV3 [Medical]
GENETestsPTRHD1
Target ValidationPTRHD1
Huge Navigator PTRHD1 [HugePedia]
ClinGenPTRHD1
Clinical trials, drugs, therapy
MyCancerGenomePTRHD1
Protein Interactions : CTDPTRHD1
Pharm GKB GenePA162379611
PharosQ6GMV3
Clinical trialPTRHD1
Miscellaneous
canSAR (ICR)PTRHD1
HarmonizomePTRHD1
DataMed IndexPTRHD1
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPTRHD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:17:39 CEST 2021

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