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PTRHD1 (peptidyl-tRNA hydrolase domain containing 1)

Identity

Alias_namesC2orf79
chromosome 2 open reading frame 79
Alias_symbol (synonym)LOC391356
Other alias
HGNC (Hugo) PTRHD1
LocusID (NCBI) 391356
Atlas_Id 72396
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 24790267 and ends at 24793382 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Domains : Interpro (EBI)
Nomenclature
HGNC (Hugo)PTRHD1   33782
Cards
Entrez_Gene (NCBI)PTRHD1  391356  peptidyl-tRNA hydrolase domain containing 1
AliasesC2orf79
GeneCards (Weizmann)PTRHD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:24790267-24793382 [Contig_View]  PTRHD1 [Vega]
TCGA cBioPortalPTRHD1
AceView (NCBI)PTRHD1
Genatlas (Paris)PTRHD1
WikiGenes391356
SOURCE (Princeton)PTRHD1
Genetics Home Reference (NIH)PTRHD1
Genomic and cartography
GoldenPath hg38 (UCSC)PTRHD1  -     chr2:24790267-24793382 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PTRHD1  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblPTRHD1 - 2p23.3 [CytoView hg19]  PTRHD1 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIPTRHD1 [Mapview hg19]  PTRHD1 [Mapview hg38]
OMIM617342   
Gene and transcription
Genbank (Entrez)BC073803 HQ447572
/åxtdef.html#REFSEQ TARGET=REFSEQ>RefSeq transcript (Entrez)NM_001013663
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PTRHD1
Cluster EST : UnigeneHs.406607 [ NCBI ]
CGAP (NCI)Hs.406607
Gene ExpressionPTRHD1 [ NCBI-GEO ]   PTRHD1 [ EBI - ARRAY_EXPRESS ]   PTRHD1 [ SEEK ]   PTRHD1 [ MEM ]
Gene Expression Viewer (FireBrowse)PTRHD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391356
GTEX Portal (Tissue expression)PTRHD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6GMV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6GMV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6GMV3
Splice isoforms : SwissVarQ6GMV3
Catalytic activity : Enzyme3.1.1.29 [ Enzyme-Expasy ]   3.1.1.293.1.1.29 [ IntEnz-EBI ]   3.1.1.29 [ BRENDA ]   3.1.1.29 [ KEGG ]   
PhosPhoSitePlusQ6GMV3
Pep_tRNA_hydro_II_dom    PTH2   
Domain families : Pfam (Sanger)PTH2 (PF01981)   
Domain families : Pfam (NCBI)pfam01981   
Conserved Domain (NCBI)PTRHD1
DMDM Disease mutations391356
Blocks (Seattle)PTRHD1
SuperfamilyQ6GMV3
Peptide AtlasQ6GMV3
HPRD18406
IPIIPI00430803   
Protein Interaction databases
DIP (DOE-UCLA)Q6GMV3
IntAct (EBI)Q6GMV3
BioGRIDPTRHD1
STRING (EMBL)PTRHD1
ZODIACPTRHD1
Ontologies - Pathways
QuickGOQ6GMV3
Ontology : AmiGOaminoacyl-tRNA hydrolase activity  extracellular exosome  
Ontology : EGO-EBIaminoacyl-tRNA hydrolase activity  extracellular exosome  
NDEx NetworkPTRHD1
Atlas of Cancer Signalling NetworkPTRHD1
Wikipedia pathwaysPTRHD1
Orthology - Evolution
OrthoDB391356
Phylogenetic Trees/Animal Genes : TreeFamPTRHD1
HOVERGENQ6GMV3
HOGENOMQ6GMV3
Homologs : HomoloGenePTRHD1
Homology/Alignments : Family Browser (UCSC)PTRHD1
Gene fusions - Rearrangements
Tumor Fusion PortalPTRHD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPTRHD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PTRHD1
dbVarPTRHD1
ClinVarPTRHD1
1000_GenomesPTRHD1 
Exome Variant ServerPTRHD1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP391356
Genomic Variants (DGV)PTRHD1 [DGVbeta]
DECIPHERPTRHD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPTRHD1 
Mutations
ICGC Data PortalPTRHD1 
TCGA Data PortalPTRHD1 
Broad Tumor PortalPTRHD1
OASIS PortalPTRHD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPTRHD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPTRHD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PTRHD1
DgiDB (Drug Gene Interaction Database)PTRHD1
DoCM (Curated mutations)PTRHD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PTRHD1 (select a term)
intoGenPTRHD1
Cancer3DPTRHD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617342   
Orphanet
DisGeNETPTRHD1
MedgenPTRHD1
Genetic Testing Registry PTRHD1
NextProtQ6GMV3 [Medical]
TSGene391356
GENETestsPTRHD1
Target ValidationPTRHD1
Huge Navigator PTRHD1 [HugePedia]
snp3D : Map Gene to Disease391356
BioCentury BCIQPTRHD1
ClinGenPTRHD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391356
Chemical/Pharm GKB GenePA162379611
Clinical trialPTRHD1
Miscellaneous
canSAR (ICR)PTRHD1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePTRHD1
EVEXPTRHD1
GoPubMedPTRHD1
iHOPPTRHD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:06:07 CET 2017

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