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PUDP (pseudouridine 5'-phosphatase)

Identity

Alias_namesFAM16AX
HDHD1A
HDHD1
family with sequence similarity 16, member A, X-linked
haloacid dehalogenase-like hydrolase domain containing 1A
haloacid dehalogenase-like hydrolase domain containing 1
Alias_symbol (synonym)DXF68S1E
GS1
Other alias
HGNC (Hugo) PUDP
LocusID (NCBI) 8226
Atlas_Id 77804
Location Xp22.31  [Link to chromosome band Xp22]
Location_base_pair Starts at 7048920 and ends at 7148190 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PUDP   16818
Cards
Entrez_Gene (NCBI)PUDP  8226  pseudouridine 5'-phosphatase
AliasesDXF68S1E; FAM16AX; GS1; HDHD1; 
HDHD1A
GeneCards (Weizmann)PUDP
Ensembl hg19 (Hinxton)ENSG00000130021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130021 [Gene_View]  chrX:7048920-7148190 [Contig_View]  PUDP [Vega]
ICGC DataPortalENSG00000130021
TCGA cBioPortalPUDP
AceView (NCBI)PUDP
Genatlas (Paris)PUDP
WikiGenes8226
SOURCE (Princeton)PUDP
Genetics Home Reference (NIH)PUDP
Genomic and cartography
GoldenPath hg38 (UCSC)PUDP  -     chrX:7048920-7148190 -  Xp22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PUDP  -     Xp22.31   [Description]    (hg19-Feb_2009)
EnsemblPUDP - Xp22.31 [CytoView hg19]  PUDP - Xp22.31 [CytoView hg38]
Mapping of homologs : NCBIPUDP [Mapview hg19]  PUDP [Mapview hg38]
OMIM306480   
Gene and transcription
Genbank (Entrez)AA262524 AK223405 AK300740 AK300985 AK307088
RefSeq transcript (Entrez)NM_001135565 NM_001178135 NM_001178136 NM_012080
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PUDP
Cluster EST : UnigeneHs.185910 [ NCBI ]
CGAP (NCI)Hs.185910
Alternative Splicing GalleryENSG00000130021
Gene ExpressionPUDP [ NCBI-GEO ]   PUDP [ EBI - ARRAY_EXPRESS ]   PUDP [ SEEK ]   PUDP [ MEM ]
Gene Expression Viewer (FireBrowse)PUDP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8226
GTEX Portal (Tissue expression)PUDP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08623   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08623  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08623
Splice isoforms : SwissVarQ08623
Catalytic activity : Enzyme3.1.3.96 [ Enzyme-Expasy ]   3.1.3.963.1.3.96 [ IntEnz-EBI ]   3.1.3.96 [ BRENDA ]   3.1.3.96 [ KEGG ]   
PhosPhoSitePlusQ08623
Domains : Interpro (EBI)HAD-like_dom    HAD-SF_hydro_IA   
Domain families : Pfam (Sanger)HAD_2 (PF13419)   
Domain families : Pfam (NCBI)pfam13419   
Conserved Domain (NCBI)PUDP
DMDM Disease mutations8226
Blocks (Seattle)PUDP
PDB (SRS)3L5K   
PDB (PDBSum)3L5K   
PDB (IMB)3L5K   
PDB (RSDB)3L5K   
Structural Biology KnowledgeBase3L5K   
SCOP (Structural Classification of Proteins)3L5K   
CATH (Classification of proteins structures)3L5K   
SuperfamilyQ08623
Human Protein AtlasENSG00000130021
Peptide AtlasQ08623
HPRD02383
IPIIPI00302436   IPI00908643   IPI01013783   IPI00922433   IPI00913889   
Protein Interaction databases
DIP (DOE-UCLA)Q08623
IntAct (EBI)Q08623
FunCoupENSG00000130021
BioGRIDPUDP
STRING (EMBL)PUDP
ZODIACPUDP
Ontologies - Pathways
QuickGOQ08623
Ontology : AmiGOmolecular_function  cytoplasm  cytosol  biological_process  nucleotide metabolic process  dephosphorylation  hydrolase activity  phosphatase activity  pyrimidine nucleoside salvage  metal ion binding  extracellular exosome  pseudouridine 5'-phosphatase activity  
Ontology : EGO-EBImolecular_function  cytoplasm  cytosol  biological_process  nucleotide metabolic process  dephosphorylation  hydrolase activity  phosphatase activity  pyrimidine nucleoside salvage  metal ion binding  extracellular exosome  pseudouridine 5'-phosphatase activity  
NDEx NetworkPUDP
Atlas of Cancer Signalling NetworkPUDP
Wikipedia pathwaysPUDP
Orthology - Evolution
OrthoDB8226
GeneTree (enSembl)ENSG00000130021
Phylogenetic Trees/Animal Genes : TreeFamPUDP
HOVERGENQ08623
HOGENOMQ08623
Homologs : HomoloGenePUDP
Homology/Alignments : Family Browser (UCSC)PUDP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPUDP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PUDP
dbVarPUDP
ClinVarPUDP
1000_GenomesPUDP 
Exome Variant ServerPUDP
ExAC (Exome Aggregation Consortium)PUDP (select the gene name)
Genetic variants : HAPMAP8226
Genomic Variants (DGV)PUDP [DGVbeta]
DECIPHERPUDP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPUDP 
Mutations
ICGC Data PortalPUDP 
TCGA Data PortalPUDP 
Broad Tumor PortalPUDP
OASIS PortalPUDP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPUDP
BioMutasearch PUDP
DgiDB (Drug Gene Interaction Database)PUDP
DoCM (Curated mutations)PUDP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PUDP (select a term)
intoGenPUDP
Cancer3DPUDP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM306480   
Orphanet
MedgenPUDP
Genetic Testing Registry PUDP
NextProtQ08623 [Medical]
TSGene8226
GENETestsPUDP
Target ValidationPUDP
Huge Navigator PUDP [HugePedia]
snp3D : Map Gene to Disease8226
BioCentury BCIQPUDP
ClinGenPUDP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8226
Chemical/Pharm GKB GenePA165756731
Clinical trialPUDP
Miscellaneous
canSAR (ICR)PUDP (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePUDP
EVEXPUDP
GoPubMedPUDP
iHOPPUDP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:39 CEST 2017

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