Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PUM3 (pumilio RNA binding family member 3)

Identity

Alias_namesKIAA0020
KIAA0020
Alias_symbol (synonym)XTP5
PEN
PUF6
hPUF-A
HA-8
Other aliasHLA-HA8
PUF-A
HGNC (Hugo) PUM3
LocusID (NCBI) 9933
Atlas_Id 77962
Location 9p24.2  [Link to chromosome band 9p24]
Location_base_pair Starts at 2804155 and ends at 2844130 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GLIS3 (9p24.2) / PUM3 (9p24.2)PUM3 (9p24.2) / INS-IGF2 (11p15.5)PUM3 (9p24.2) / PUM3 (9p24.2)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PUM3   29676
Cards
Entrez_Gene (NCBI)PUM3  9933  pumilio RNA binding family member 3
AliasesHA-8; HLA-HA8; KIAA0020; PEN; 
PUF-A; PUF6; XTP5
GeneCards (Weizmann)PUM3
Ensembl hg19 (Hinxton)ENSG00000080608 [Gene_View]  chr9:2804155-2844130 [Contig_View]  PUM3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000080608 [Gene_View]  chr9:2804155-2844130 [Contig_View]  PUM3 [Vega]
ICGC DataPortalENSG00000080608
TCGA cBioPortalPUM3
AceView (NCBI)PUM3
Genatlas (Paris)PUM3
WikiGenes9933
SOURCE (Princeton)PUM3
Genetics Home Reference (NIH)PUM3
Genomic and cartography
GoldenPath hg19 (UCSC)PUM3  -     chr9:2804155-2844130 -  9p24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PUM3  -     9p24.2   [Description]    (hg38-Dec_2013)
EnsemblPUM3 - 9p24.2 [CytoView hg19]  PUM3 - 9p24.2 [CytoView hg38]
Mapping of homologs : NCBIPUM3 [Mapview hg19]  PUM3 [Mapview hg38]
OMIM609960   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001031691 NM_014878
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)PUM3
Cluster EST : UnigeneHs.493309 [ NCBI ]
CGAP (NCI)Hs.493309
Alternative Splicing GalleryENSG00000080608
Gene ExpressionPUM3 [ NCBI-GEO ]   PUM3 [ EBI - ARRAY_EXPRESS ]   PUM3 [ SEEK ]   PUM3 [ MEM ]
Gene Expression Viewer (FireBrowse)PUM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)9933
GTEX Portal (Tissue expression)PUM3
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PUM3
DMDM Disease mutations9933
Blocks (Seattle)PUM3
Human Protein AtlasENSG00000080608
HPRD08822
IPIIPI00791325   
Protein Interaction databases
FunCoupENSG00000080608
BioGRIDPUM3
STRING (EMBL)PUM3
ZODIACPUM3
Ontologies - Pathways
Huge Navigator PUM3 [HugePedia]
snp3D : Map Gene to Disease9933
BioCentury BCIQPUM3
ClinGenPUM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9933
Chemical/Pharm GKB GenePA134895115
Clinical trialPUM3
Miscellaneous
canSAR (ICR)PUM3 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePUM3
EVEXPUM3
GoPubMedPUM3
iHOPPUM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:40:14 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.