Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PURPL (p53 upregulated regulator of p53 levels)

Identity

Alias_namesLINC01021
long intergenic non-protein coding RNA 1021
Alias_symbol (synonym)LOC643401
RP11-46C20.1
Other alias
HGNC (Hugo) PURPL
LocusID (NCBI) 643401
Atlas_Id 79077
Location 5p14.1  [Link to chromosome band 5p14]
Location_base_pair Starts at 27472292 and ends at 27496401 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PURPL   48995
Cards
Entrez_Gene (NCBI)PURPL  643401  p53 upregulated regulator of p53 levels
AliasesLINC01021
GeneCards (Weizmann)PURPL
Ensembl hg19 (Hinxton)ENSG00000250337 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250337 [Gene_View]  ENSG00000250337 [Sequence]  chr5:27472292-27496401 [Contig_View]  PURPL [Vega]
ICGC DataPortalENSG00000250337
TCGA cBioPortalPURPL
AceView (NCBI)PURPL
Genatlas (Paris)PURPL
WikiGenes643401
SOURCE (Princeton)PURPL
Genetics Home Reference (NIH)PURPL
Genomic and cartography
GoldenPath hg38 (UCSC)PURPL  -     chr5:27472292-27496401 +  5p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PURPL  -     5p14.1   [Description]    (hg19-Feb_2009)
GoldenPathPURPL - 5p14.1 [CytoView hg19]  PURPL - 5p14.1 [CytoView hg38]
ImmunoBaseENSG00000250337
Mapping of homologs : NCBIPURPL [Mapview hg19]  PURPL [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039509 BC046201 BC101438 BC101982 BC122523
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PURPL
Cluster EST : UnigeneHs.533212 [ NCBI ]
CGAP (NCI)Hs.533212
Alternative Splicing GalleryENSG00000250337
Gene ExpressionPURPL [ NCBI-GEO ]   PURPL [ EBI - ARRAY_EXPRESS ]   PURPL [ SEEK ]   PURPL [ MEM ]
Gene Expression Viewer (FireBrowse)PURPL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)643401
GTEX Portal (Tissue expression)PURPL
Human Protein AtlasENSG00000250337-PURPL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PURPL
DMDM Disease mutations643401
Blocks (Seattle)PURPL
Human Protein Atlas [tissue]ENSG00000250337-PURPL [tissue]
Protein Interaction databases
FunCoupENSG00000250337
BioGRIDPURPL
STRING (EMBL)PURPL
ZODIACPURPL
Ontologies - Pathways
Huge Navigator PURPL [HugePedia]
snp3D : Map Gene to Disease643401
BioCentury BCIQPURPL
ClinGenPURPL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643401
Clinical trialPURPL
Miscellaneous
canSAR (ICR)PURPL (select the gene name)
DataMed IndexPURPL
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePURPL
EVEXPURPL
GoPubMedPURPL
iHOPPURPL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 7 17:44:07 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.