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PUS3 (pseudouridylate synthase 3)

Identity

Alias_symbol (synonym)FKSG32
Other alias2610020J05Rik
MRT55
HGNC (Hugo) PUS3
LocusID (NCBI) 83480
Atlas_Id 72401
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 125893485 and ends at 125903221 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PUS3   25461
Cards
Entrez_Gene (NCBI)PUS3  83480  pseudouridylate synthase 3
Aliases2610020J05Rik; FKSG32; MRT55
GeneCards (Weizmann)PUS3
Ensembl hg19 (Hinxton)ENSG00000110060 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110060 [Gene_View]  chr11:125893485-125903221 [Contig_View]  PUS3 [Vega]
ICGC DataPortalENSG00000110060
TCGA cBioPortalPUS3
AceView (NCBI)PUS3
Genatlas (Paris)PUS3
WikiGenes83480
SOURCE (Princeton)PUS3
Genetics Home Reference (NIH)PUS3
Genomic and cartography
GoldenPath hg38 (UCSC)PUS3  -     chr11:125893485-125903221 -  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PUS3  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblPUS3 - 11q24.2 [CytoView hg19]  PUS3 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIPUS3 [Mapview hg19]  PUS3 [Mapview hg38]
OMIM616283   617051   
Gene and transcription
Genbank (Entrez)AF325689 AK055702 AK074218 AK314251 BC004822
RefSeq transcript (Entrez)NM_001271985 NM_031307
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PUS3
Cluster EST : UnigeneHs.660922 [ NCBI ]
CGAP (NCI)Hs.660922
Alternative Splicing GalleryENSG00000110060
Gene ExpressionPUS3 [ NCBI-GEO ]   PUS3 [ EBI - ARRAY_EXPRESS ]   PUS3 [ SEEK ]   PUS3 [ MEM ]
Gene Expression Viewer (FireBrowse)PUS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83480
GTEX Portal (Tissue expression)PUS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZE2
Splice isoforms : SwissVarQ9BZE2
PhosPhoSitePlusQ9BZE2
Domains : Interpro (EBI)PsdUridine_synth_cat_dom    PsdUridine_synth_TruA    PsdUridine_synth_TruA_a/b_dom    PsdUridine_synth_TruA_C    PsdUridine_synth_TruA_N   
Domain families : Pfam (Sanger)PseudoU_synth_1 (PF01416)   
Domain families : Pfam (NCBI)pfam01416   
Conserved Domain (NCBI)PUS3
DMDM Disease mutations83480
Blocks (Seattle)PUS3
SuperfamilyQ9BZE2
Human Protein AtlasENSG00000110060
Peptide AtlasQ9BZE2
HPRD15195
IPIIPI00306260   IPI00978468   IPI00982332   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZE2
IntAct (EBI)Q9BZE2
FunCoupENSG00000110060
BioGRIDPUS3
STRING (EMBL)PUS3
ZODIACPUS3
Ontologies - Pathways
QuickGOQ9BZE2
Ontology : AmiGORNA binding  nucleus  cytoplasm  cytosol  tRNA modification  pseudouridine synthase activity  pseudouridine synthase activity  pseudouridine synthase activity  tRNA pseudouridine synthesis  tRNA pseudouridine synthesis  mRNA pseudouridine synthesis  
Ontology : EGO-EBIRNA binding  nucleus  cytoplasm  cytosol  tRNA modification  pseudouridine synthase activity  pseudouridine synthase activity  pseudouridine synthase activity  tRNA pseudouridine synthesis  tRNA pseudouridine synthesis  mRNA pseudouridine synthesis  
NDEx NetworkPUS3
Atlas of Cancer Signalling NetworkPUS3
Wikipedia pathwaysPUS3
Orthology - Evolution
OrthoDB83480
GeneTree (enSembl)ENSG00000110060
Phylogenetic Trees/Animal Genes : TreeFamPUS3
HOVERGENQ9BZE2
HOGENOMQ9BZE2
Homologs : HomoloGenePUS3
Homology/Alignments : Family Browser (UCSC)PUS3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPUS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PUS3
dbVarPUS3
ClinVarPUS3
1000_GenomesPUS3 
Exome Variant ServerPUS3
ExAC (Exome Aggregation Consortium)PUS3 (select the gene name)
Genetic variants : HAPMAP83480
Genomic Variants (DGV)PUS3 [DGVbeta]
DECIPHERPUS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPUS3 
Mutations
ICGC Data PortalPUS3 
TCGA Data PortalPUS3 
Broad Tumor PortalPUS3
OASIS PortalPUS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPUS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPUS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PUS3
DgiDB (Drug Gene Interaction Database)PUS3
DoCM (Curated mutations)PUS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PUS3 (select a term)
intoGenPUS3
Cancer3DPUS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616283    617051   
Orphanet
MedgenPUS3
Genetic Testing Registry PUS3
NextProtQ9BZE2 [Medical]
TSGene83480
GENETestsPUS3
Target ValidationPUS3
Huge Navigator PUS3 [HugePedia]
snp3D : Map Gene to Disease83480
BioCentury BCIQPUS3
ClinGenPUS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83480
Chemical/Pharm GKB GenePA134874048
Clinical trialPUS3
Miscellaneous
canSAR (ICR)PUS3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePUS3
EVEXPUS3
GoPubMedPUS3
iHOPPUS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:54 CEST 2017

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