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PUS7 (pseudouridylate synthase 7 (putative))

Identity

Alias_namespseudouridylate synthase 7 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ20485
Other alias-
HGNC (Hugo) PUS7
LocusID (NCBI) 54517
Atlas_Id 72402
Location 7q22.3  [Link to chromosome band 7q22]
Location_base_pair Starts at 105456501 and ends at 105508520 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LAMB1 (7q31.1) / PUS7 (7q22.3)SRPK2 (7q22.3) / PUS7 (7q22.3)SRPK2 PUS7
LAMB1 PUS7

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PUS7   26033
Cards
Entrez_Gene (NCBI)PUS7  54517  pseudouridylate synthase 7 (putative)
Aliases
GeneCards (Weizmann)PUS7
Ensembl hg19 (Hinxton)ENSG00000091127 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000091127 [Gene_View]  chr7:105456501-105508520 [Contig_View]  PUS7 [Vega]
ICGC DataPortalENSG00000091127
TCGA cBioPortalPUS7
AceView (NCBI)PUS7
Genatlas (Paris)PUS7
WikiGenes54517
SOURCE (Princeton)PUS7
Genetics Home Reference (NIH)PUS7
Genomic and cartography
GoldenPath hg38 (UCSC)PUS7  -     chr7:105456501-105508520 -  7q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PUS7  -     7q22.3   [Description]    (hg19-Feb_2009)
EnsemblPUS7 - 7q22.3 [CytoView hg19]  PUS7 - 7q22.3 [CytoView hg38]
Mapping of homologs : NCBIPUS7 [Mapview hg19]  PUS7 [Mapview hg38]
OMIM616261   
Gene and transcription
Genbank (Entrez)AB067484 AK000492 AK091283 AK128629 BC005209
RefSeq transcript (Entrez)NM_001318163 NM_001318164 NM_019042
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PUS7
Cluster EST : UnigeneHs.520619 [ NCBI ]
CGAP (NCI)Hs.520619
Alternative Splicing GalleryENSG00000091127
Gene ExpressionPUS7 [ NCBI-GEO ]   PUS7 [ EBI - ARRAY_EXPRESS ]   PUS7 [ SEEK ]   PUS7 [ MEM ]
Gene Expression Viewer (FireBrowse)PUS7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54517
GTEX Portal (Tissue expression)PUS7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PZ0
Splice isoforms : SwissVarQ96PZ0
PhosPhoSitePlusQ96PZ0
Domaine pattern : Prosite (Expaxy)TRUD (PS50984)    UPF0024 (PS01268)   
Domains : Interpro (EBI)PsdUridine_synth_cat_dom    PsdUridine_synth_TruD    PsdUridine_synth_TruD_CS    PsdUridine_synth_TruD_insert   
Domain families : Pfam (Sanger)TruD (PF01142)   
Domain families : Pfam (NCBI)pfam01142   
Conserved Domain (NCBI)PUS7
DMDM Disease mutations54517
Blocks (Seattle)PUS7
PDB (SRS)5KKP   
PDB (PDBSum)5KKP   
PDB (IMB)5KKP   
PDB (RSDB)5KKP   
Structural Biology KnowledgeBase5KKP   
SCOP (Structural Classification of Proteins)5KKP   
CATH (Classification of proteins structures)5KKP   
SuperfamilyQ96PZ0
Human Protein AtlasENSG00000091127
Peptide AtlasQ96PZ0
HPRD07914
IPIIPI00044761   IPI00945342   IPI00945494   
Protein Interaction databases
DIP (DOE-UCLA)Q96PZ0
IntAct (EBI)Q96PZ0
FunCoupENSG00000091127
BioGRIDPUS7
STRING (EMBL)PUS7
ZODIACPUS7
Ontologies - Pathways
QuickGOQ96PZ0
Ontology : AmiGOpseudouridine synthesis  RNA binding  nucleus  tRNA processing  pseudouridine synthase activity  enzyme binding  
Ontology : EGO-EBIpseudouridine synthesis  RNA binding  nucleus  tRNA processing  pseudouridine synthase activity  enzyme binding  
NDEx NetworkPUS7
Atlas of Cancer Signalling NetworkPUS7
Wikipedia pathwaysPUS7
Orthology - Evolution
OrthoDB54517
GeneTree (enSembl)ENSG00000091127
Phylogenetic Trees/Animal Genes : TreeFamPUS7
HOVERGENQ96PZ0
HOGENOMQ96PZ0
Homologs : HomoloGenePUS7
Homology/Alignments : Family Browser (UCSC)PUS7
Gene fusions - Rearrangements
Fusion: TCGASRPK2 PUS7
Fusion: TCGALAMB1 PUS7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPUS7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PUS7
dbVarPUS7
ClinVarPUS7
1000_GenomesPUS7 
Exome Variant ServerPUS7
ExAC (Exome Aggregation Consortium)PUS7 (select the gene name)
Genetic variants : HAPMAP54517
Genomic Variants (DGV)PUS7 [DGVbeta]
DECIPHERPUS7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPUS7 
Mutations
ICGC Data PortalPUS7 
TCGA Data PortalPUS7 
Broad Tumor PortalPUS7
OASIS PortalPUS7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPUS7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPUS7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PUS7
DgiDB (Drug Gene Interaction Database)PUS7
DoCM (Curated mutations)PUS7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PUS7 (select a term)
intoGenPUS7
Cancer3DPUS7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616261   
Orphanet
MedgenPUS7
Genetic Testing Registry PUS7
NextProtQ96PZ0 [Medical]
TSGene54517
GENETestsPUS7
Target ValidationPUS7
Huge Navigator PUS7 [HugePedia]
snp3D : Map Gene to Disease54517
BioCentury BCIQPUS7
ClinGenPUS7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54517
Chemical/Pharm GKB GenePA143485587
Clinical trialPUS7
Miscellaneous
canSAR (ICR)PUS7 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePUS7
EVEXPUS7
GoPubMedPUS7
iHOPPUS7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:37:54 CEST 2017

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