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PUS7L (pseudouridylate synthase 7 like)

Identity

Alias_namespseudouridylate synthase 7 homolog (S. cerevisiae)-like
pseudouridylate synthase 7-like
Alias_symbol (synonym)DKFZP434G1415
Other alias-
HGNC (Hugo) PUS7L
LocusID (NCBI) 83448
Atlas_Id 72403
Location 12q12  [Link to chromosome band 12q12]
Location_base_pair Starts at 43728609 and ends at 43758773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PUS7L (12q12) / SMCO2 (12p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PUS7L   25276
Cards
Entrez_Gene (NCBI)PUS7L  83448  pseudouridylate synthase 7 like
Aliases
GeneCards (Weizmann)PUS7L
Ensembl hg19 (Hinxton)ENSG00000129317 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129317 [Gene_View]  chr12:43728609-43758773 [Contig_View]  PUS7L [Vega]
ICGC DataPortalENSG00000129317
TCGA cBioPortalPUS7L
AceView (NCBI)PUS7L
Genatlas (Paris)PUS7L
WikiGenes83448
SOURCE (Princeton)PUS7L
Genetics Home Reference (NIH)PUS7L
Genomic and cartography
GoldenPath hg38 (UCSC)PUS7L  -     chr12:43728609-43758773 -  12q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PUS7L  -     12q12   [Description]    (hg19-Feb_2009)
EnsemblPUS7L - 12q12 [CytoView hg19]  PUS7L - 12q12 [CytoView hg38]
Mapping of homologs : NCBIPUS7L [Mapview hg19]  PUS7L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092030 AK097331 AK225903 AL136759 AM392971
RefSeq transcript (Entrez)NM_001098614 NM_001098615 NM_001271826 NM_031292
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PUS7L
Cluster EST : UnigeneHs.445814 [ NCBI ]
CGAP (NCI)Hs.445814
Alternative Splicing GalleryENSG00000129317
Gene ExpressionPUS7L [ NCBI-GEO ]   PUS7L [ EBI - ARRAY_EXPRESS ]   PUS7L [ SEEK ]   PUS7L [ MEM ]
Gene Expression Viewer (FireBrowse)PUS7L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83448
GTEX Portal (Tissue expression)PUS7L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0K6
Splice isoforms : SwissVarQ9H0K6
PhosPhoSitePlusQ9H0K6
Domaine pattern : Prosite (Expaxy)TRUD (PS50984)   
Domains : Interpro (EBI)PsdUridine_synth_cat_dom    PsdUridine_synth_TruD    PsdUridine_synth_TruD_insert   
Domain families : Pfam (Sanger)TruD (PF01142)   
Domain families : Pfam (NCBI)pfam01142   
Conserved Domain (NCBI)PUS7L
DMDM Disease mutations83448
Blocks (Seattle)PUS7L
SuperfamilyQ9H0K6
Human Protein AtlasENSG00000129317
Peptide AtlasQ9H0K6
HPRD13189
IPIIPI00549239   IPI00798013   IPI01021742   IPI01022649   IPI01022471   IPI01021106   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0K6
IntAct (EBI)Q9H0K6
FunCoupENSG00000129317
BioGRIDPUS7L
STRING (EMBL)PUS7L
ZODIACPUS7L
Ontologies - Pathways
QuickGOQ9H0K6
Ontology : AmiGOpseudouridine synthesis  RNA binding  protein binding  tRNA processing  pseudouridine synthase activity  
Ontology : EGO-EBIpseudouridine synthesis  RNA binding  protein binding  tRNA processing  pseudouridine synthase activity  
NDEx NetworkPUS7L
Atlas of Cancer Signalling NetworkPUS7L
Wikipedia pathwaysPUS7L
Orthology - Evolution
OrthoDB83448
GeneTree (enSembl)ENSG00000129317
Phylogenetic Trees/Animal Genes : TreeFamPUS7L
HOVERGENQ9H0K6
HOGENOMQ9H0K6
Homologs : HomoloGenePUS7L
Homology/Alignments : Family Browser (UCSC)PUS7L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPUS7L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PUS7L
dbVarPUS7L
ClinVarPUS7L
1000_GenomesPUS7L 
Exome Variant ServerPUS7L
ExAC (Exome Aggregation Consortium)PUS7L (select the gene name)
Genetic variants : HAPMAP83448
Genomic Variants (DGV)PUS7L [DGVbeta]
DECIPHERPUS7L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPUS7L 
Mutations
ICGC Data PortalPUS7L 
TCGA Data PortalPUS7L 
Broad Tumor PortalPUS7L
OASIS PortalPUS7L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPUS7L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPUS7L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PUS7L
DgiDB (Drug Gene Interaction Database)PUS7L
DoCM (Curated mutations)PUS7L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PUS7L (select a term)
intoGenPUS7L
Cancer3DPUS7L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPUS7L
Genetic Testing Registry PUS7L
NextProtQ9H0K6 [Medical]
TSGene83448
GENETestsPUS7L
Target ValidationPUS7L
Huge Navigator PUS7L [HugePedia]
snp3D : Map Gene to Disease83448
BioCentury BCIQPUS7L
ClinGenPUS7L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83448
Chemical/Pharm GKB GenePA143485588
Clinical trialPUS7L
Miscellaneous
canSAR (ICR)PUS7L (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePUS7L
EVEXPUS7L
GoPubMedPUS7L
iHOPPUS7L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:40 CEST 2017

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