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PUSL1 (pseudouridylate synthase-like 1)

Identity

Alias_symbol (synonym)FLJ90811
Other alias-
HGNC (Hugo) PUSL1
LocusID (NCBI) 126789
Atlas_Id 72404
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1243994 and ends at 1247057 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PUSL1 (1p36.33) / ACAP3 (1p36.33)PUSL1 (1p36.33) / AGRN (1p36.33)PUSL1 (1p36.33) / MLXIPL (7q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PUSL1   26914
Cards
Entrez_Gene (NCBI)PUSL1  126789  pseudouridylate synthase-like 1
Aliases
GeneCards (Weizmann)PUSL1
Ensembl hg19 (Hinxton)ENSG00000169972 [Gene_View]  chr1:1243994-1247057 [Contig_View]  PUSL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169972 [Gene_View]  chr1:1243994-1247057 [Contig_View]  PUSL1 [Vega]
ICGC DataPortalENSG00000169972
TCGA cBioPortalPUSL1
AceView (NCBI)PUSL1
Genatlas (Paris)PUSL1
WikiGenes126789
SOURCE (Princeton)PUSL1
Genetics Home Reference (NIH)PUSL1
Genomic and cartography
GoldenPath hg19 (UCSC)PUSL1  -     chr1:1243994-1247057 +  1p36.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PUSL1  -     1p36.33   [Description]    (hg38-Dec_2013)
EnsemblPUSL1 - 1p36.33 [CytoView hg19]  PUSL1 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIPUSL1 [Mapview hg19]  PUSL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027721 AK075292 AK298218 BC034304 HQ447403
RefSeq transcript (Entrez)NM_153339
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929288
Consensus coding sequences : CCDS (NCBI)PUSL1
Cluster EST : UnigeneHs.400659 [ NCBI ]
CGAP (NCI)Hs.400659
Alternative Splicing GalleryENSG00000169972
Gene ExpressionPUSL1 [ NCBI-GEO ]   PUSL1 [ EBI - ARRAY_EXPRESS ]   PUSL1 [ SEEK ]   PUSL1 [ MEM ]
Gene Expression Viewer (FireBrowse)PUSL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126789
GTEX Portal (Tissue expression)PUSL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0Z8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0Z8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0Z8
Splice isoforms : SwissVarQ8N0Z8
Catalytic activity : Enzyme5.4.99.- [ Enzyme-Expasy ]   5.4.99.-5.4.99.- [ IntEnz-EBI ]   5.4.99.- [ BRENDA ]   5.4.99.- [ KEGG ]   
PhosPhoSitePlusQ8N0Z8
Domains : Interpro (EBI)PsdUridine_synth_cat_dom    PsdUridine_synth_TruA    PsdUridine_synth_TruA_a/b_dom    PsdUridine_synth_TruA_C    PsdUridine_synth_TruA_N   
Domain families : Pfam (Sanger)PseudoU_synth_1 (PF01416)   
Domain families : Pfam (NCBI)pfam01416   
Conserved Domain (NCBI)PUSL1
DMDM Disease mutations126789
Blocks (Seattle)PUSL1
SuperfamilyQ8N0Z8
Human Protein AtlasENSG00000169972
Peptide AtlasQ8N0Z8
HPRD08301
IPIIPI00166125   IPI00915388   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0Z8
IntAct (EBI)Q8N0Z8
FunCoupENSG00000169972
BioGRIDPUSL1
STRING (EMBL)PUSL1
ZODIACPUSL1
Ontologies - Pathways
QuickGOQ8N0Z8
Ontology : AmiGOpseudouridine synthesis  RNA binding  tRNA processing  pseudouridine synthase activity  intracellular membrane-bounded organelle  
Ontology : EGO-EBIpseudouridine synthesis  RNA binding  tRNA processing  pseudouridine synthase activity  intracellular membrane-bounded organelle  
NDEx NetworkPUSL1
Atlas of Cancer Signalling NetworkPUSL1
Wikipedia pathwaysPUSL1
Orthology - Evolution
OrthoDB126789
GeneTree (enSembl)ENSG00000169972
Phylogenetic Trees/Animal Genes : TreeFamPUSL1
HOVERGENQ8N0Z8
HOGENOMQ8N0Z8
Homologs : HomoloGenePUSL1
Homology/Alignments : Family Browser (UCSC)PUSL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPUSL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PUSL1
dbVarPUSL1
ClinVarPUSL1
1000_GenomesPUSL1 
Exome Variant ServerPUSL1
ExAC (Exome Aggregation Consortium)PUSL1 (select the gene name)
Genetic variants : HAPMAP126789
Genomic Variants (DGV)PUSL1 [DGVbeta]
DECIPHER (Syndromes)1:1243994-1247057  ENSG00000169972
CONAN: Copy Number AnalysisPUSL1 
Mutations
ICGC Data PortalPUSL1 
TCGA Data PortalPUSL1 
Broad Tumor PortalPUSL1
OASIS PortalPUSL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPUSL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPUSL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PUSL1
DgiDB (Drug Gene Interaction Database)PUSL1
DoCM (Curated mutations)PUSL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PUSL1 (select a term)
intoGenPUSL1
Cancer3DPUSL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPUSL1
Genetic Testing Registry PUSL1
NextProtQ8N0Z8 [Medical]
TSGene126789
GENETestsPUSL1
Huge Navigator PUSL1 [HugePedia]
snp3D : Map Gene to Disease126789
BioCentury BCIQPUSL1
ClinGenPUSL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126789
Chemical/Pharm GKB GenePA134947837
Clinical trialPUSL1
Miscellaneous
canSAR (ICR)PUSL1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePUSL1
EVEXPUSL1
GoPubMedPUSL1
iHOPPUSL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:15 CET 2017

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