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PVALEF (parvalbumin like EF-hand containing)

Identity

Alias_namesAATK-AS1
AATK antisense RNA 1 (non-protein coding)
AATK antisense RNA 1
Other alias
HGNC (Hugo) PVALEF
LocusID (NCBI) 388428
Atlas_Id 79613
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 81165507 and ends at 81183164 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PVALEF   40053
Cards
Entrez_Gene (NCBI)PVALEF  388428  parvalbumin like EF-hand containing
AliasesAATK-AS1
GeneCards (Weizmann)PVALEF
Ensembl hg19 (Hinxton)ENSG00000225180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225180 [Gene_View]  chr17:81165507-81183164 [Contig_View]  PVALEF [Vega]
ICGC DataPortalENSG00000225180
TCGA cBioPortalPVALEF
AceView (NCBI)PVALEF
Genatlas (Paris)PVALEF
WikiGenes388428
SOURCE (Princeton)PVALEF
Genetics Home Reference (NIH)PVALEF
Genomic and cartography
GoldenPath hg38 (UCSC)PVALEF  -     chr17:81165507-81183164 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PVALEF  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblPVALEF - 17q25.3 [CytoView hg19]  PVALEF - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIPVALEF [Mapview hg19]  PVALEF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126811 BC140737 BC171777
RefSeq transcript (Entrez)NM_001354639 NM_207389
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PVALEF
Cluster EST : UnigeneHs.591202 [ NCBI ]
CGAP (NCI)Hs.591202
Alternative Splicing GalleryENSG00000225180
Gene ExpressionPVALEF [ NCBI-GEO ]   PVALEF [ EBI - ARRAY_EXPRESS ]   PVALEF [ SEEK ]   PVALEF [ MEM ]
Gene Expression Viewer (FireBrowse)PVALEF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)388428
GTEX Portal (Tissue expression)PVALEF
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PVALEF
DMDM Disease mutations388428
Blocks (Seattle)PVALEF
Human Protein AtlasENSG00000225180
IPIIPI00410459   
Protein Interaction databases
FunCoupENSG00000225180
BioGRIDPVALEF
STRING (EMBL)PVALEF
ZODIACPVALEF
Ontologies - Pathways
Huge Navigator PVALEF [HugePedia]
snp3D : Map Gene to Disease388428
BioCentury BCIQPVALEF
ClinGenPVALEF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388428
Clinical trialPVALEF
Miscellaneous
canSAR (ICR)PVALEF (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePVALEF
EVEXPVALEF
GoPubMedPVALEF
iHOPPVALEF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:40 CEST 2017

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