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PVRIG (poliovirus receptor related immunoglobulin domain containing)

Identity

Alias_symbol (synonym)MGC2463
C7orf15
Other aliasCD112R
HGNC (Hugo) PVRIG
LocusID (NCBI) 79037
Atlas_Id 72406
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100219248 and ends at 100221488 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PVRIG   32190
Cards
Entrez_Gene (NCBI)PVRIG  79037  poliovirus receptor related immunoglobulin domain containing
AliasesC7orf15; CD112R
GeneCards (Weizmann)PVRIG
Ensembl hg19 (Hinxton)ENSG00000213413 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213413 [Gene_View]  chr7:100219248-100221488 [Contig_View]  PVRIG [Vega]
ICGC DataPortalENSG00000213413
TCGA cBioPortalPVRIG
AceView (NCBI)PVRIG
Genatlas (Paris)PVRIG
WikiGenes79037
SOURCE (Princeton)PVRIG
Genetics Home Reference (NIH)PVRIG
Genomic and cartography
GoldenPath hg38 (UCSC)PVRIG  -     chr7:100219248-100221488 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PVRIG  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblPVRIG - 7q22.1 [CytoView hg19]  PVRIG - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIPVRIG [Mapview hg19]  PVRIG [Mapview hg38]
OMIM617012   
Gene and transcription
Genbank (Entrez)BC001129 BC032113 BC073861 BC107873 BC112090
RefSeq transcript (Entrez)NM_024070
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PVRIG
Cluster EST : UnigeneHs.729356 [ NCBI ]
CGAP (NCI)Hs.729356
Alternative Splicing GalleryENSG00000213413
Gene ExpressionPVRIG [ NCBI-GEO ]   PVRIG [ EBI - ARRAY_EXPRESS ]   PVRIG [ SEEK ]   PVRIG [ MEM ]
Gene Expression Viewer (FireBrowse)PVRIG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79037
GTEX Portal (Tissue expression)PVRIG
Human Protein AtlasENSG00000213413-PVRIG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6DKI7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6DKI7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6DKI7
Splice isoforms : SwissVarQ6DKI7
PhosPhoSitePlusQ6DKI7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PVRIG
DMDM Disease mutations79037
Blocks (Seattle)PVRIG
SuperfamilyQ6DKI7
Human Protein Atlas [tissue]ENSG00000213413-PVRIG [tissue]
Peptide AtlasQ6DKI7
IPIIPI00456942   
Protein Interaction databases
DIP (DOE-UCLA)Q6DKI7
IntAct (EBI)Q6DKI7
FunCoupENSG00000213413
BioGRIDPVRIG
STRING (EMBL)PVRIG
ZODIACPVRIG
Ontologies - Pathways
QuickGOQ6DKI7
Ontology : AmiGOreceptor activity  plasma membrane  integral component of membrane  negative regulation of T cell receptor signaling pathway  
Ontology : EGO-EBIreceptor activity  plasma membrane  integral component of membrane  negative regulation of T cell receptor signaling pathway  
NDEx NetworkPVRIG
Atlas of Cancer Signalling NetworkPVRIG
Wikipedia pathwaysPVRIG
Orthology - Evolution
OrthoDB79037
GeneTree (enSembl)ENSG00000213413
Phylogenetic Trees/Animal Genes : TreeFamPVRIG
HOVERGENQ6DKI7
HOGENOMQ6DKI7
Homologs : HomoloGenePVRIG
Homology/Alignments : Family Browser (UCSC)PVRIG
Gene fusions - Rearrangements
Fusion: Tumor Portal PVRIG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPVRIG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PVRIG
dbVarPVRIG
ClinVarPVRIG
1000_GenomesPVRIG 
Exome Variant ServerPVRIG
ExAC (Exome Aggregation Consortium)ENSG00000213413
GNOMAD BrowserENSG00000213413
Genetic variants : HAPMAP79037
Genomic Variants (DGV)PVRIG [DGVbeta]
DECIPHERPVRIG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPVRIG 
Mutations
ICGC Data PortalPVRIG 
TCGA Data PortalPVRIG 
Broad Tumor PortalPVRIG
OASIS PortalPVRIG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPVRIG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPVRIG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PVRIG
DgiDB (Drug Gene Interaction Database)PVRIG
DoCM (Curated mutations)PVRIG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PVRIG (select a term)
intoGenPVRIG
Cancer3DPVRIG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617012   
Orphanet
MedgenPVRIG
Genetic Testing Registry PVRIG
NextProtQ6DKI7 [Medical]
TSGene79037
GENETestsPVRIG
Target ValidationPVRIG
Huge Navigator PVRIG [HugePedia]
snp3D : Map Gene to Disease79037
BioCentury BCIQPVRIG
ClinGenPVRIG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79037
Chemical/Pharm GKB GenePA162400434
Clinical trialPVRIG
Miscellaneous
canSAR (ICR)PVRIG (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePVRIG
EVEXPVRIG
GoPubMedPVRIG
iHOPPVRIG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:24:09 CET 2017

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