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PVT1 (Pvt1 oncogene)

Identity

Alias_namespvt-1 (murine) oncogene homolog, MYC activator
Pvt1 oncogene homolog (mouse)
Pvt1 oncogene (non-protein coding)
Alias_symbol (synonym)NCRNA00079
LINC00079
onco-lncRNA-100
MIR1204HG
Other alias
HGNC (Hugo) PVT1
LocusID (NCBI) 5820
Atlas_Id 137
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 127794533 and ends at 128101253 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AKT3 (1q43) / PVT1 (8q24.21)APIP (11p13) / PVT1 (8q24.21)CLPTM1L (5p15.33) / PVT1 (8q24.21)
EXOC4 (7q33) / PVT1 (8q24.21)GSDMC (8q24.21) / PVT1 (8q24.21)IGK (14q32.33) / PVT1 (8q24.21)
IGL (22q11.22) / PVT1 (8q24.21)IGLV3-10 () / PVT1 (8q24.21)MIR1204 (8q24.21) / PVT1 (8q24.21)
NARS (18q21.31) / PVT1 (8q24.21)PVT1 (8q24.21) / ANXA2 (15q22.2)PVT1 (8q24.21) / ARHGEF3 (3p14.3)
PVT1 (8q24.21) / ASAP1 (8q24.21)PVT1 (8q24.21) / ATE1 (10q26.13)PVT1 (8q24.21) / CCNB1IP1 (14q11.2)
PVT1 (8q24.21) / CHD7 (8q12.2)PVT1 (8q24.21) / CLVS1 (8q12.3)PVT1 (8q24.21) / COL6A1 (21q22.3)
PVT1 (8q24.21) / EYA1 (8q13.3)PVT1 (8q24.21) / LY6H (8q24.3)PVT1 (8q24.21) / MYC (8q24.21)
PVT1 (8q24.21) / MYH7 (14q11.2)PVT1 (8q24.21) / NBEA (13q13.3)PVT1 (8q24.21) / NDRG1 (8q24.22)
PVT1 (8q24.21) / NOL4 (18q12.1)PVT1 (8q24.21) / NSMCE2 (8q24.13)PVT1 (8q24.21) / PDHX (11p13)
PVT1 (8q24.21) / PLPP4 (10q26.12)PVT1 (8q24.21) / PVT1 (8q24.21)PVT1 (8q24.21) / SCCPDH (1q44)
PVT1 (8q24.21) / SLC7A7 (14q11.2)PVT1 (8q24.21) / SMARCA2 (9p24.3)PVT1 (8q24.21) / WWOX (16q23.1)
PVT1 (8q24.21) / ZCCHC7 (9p13.2)PVT1 (8q24.21) / abParts ()RFTN1 (3p25.1) / PVT1 (8q24.21)
RNF44 (5q35.2) / PVT1 (8q24.21)SAMD12 (8q24.12) / PVT1 (8q24.21)TRA () / PVT1 (8q24.21)
TRD () / PVT1 (8q24.21)UGCG (9q31.3) / PVT1 (8q24.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias t0308q26q24ID1463 TL_t0208p11q24ID2820 TL_t0308p24q24ID3144 TL_t0808q24q24ID3125 TL_t0808q24q24ID3127
TL_t0809q24p13ID3128 TL_t0809q24q31ID3310 TL_t0813q24q13ID3126 TL_t0814q24q11ID3295 TL_t0822q24q11ID2830


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 22 ]

Solid Tumors TranslocLungSmallCellCarcID6651 TT_inv08q24q24ID100078 TT_t0108q44q24ID104539 TT_t0308p14q24ID106191 TT_t0508p15q24ID106816
TT_t0808q12q24ID6703 TT_t0808q12q24ID6704 TT_t0808q13q24ID108120 TT_t0808q24q24ID108215 TT_t0808q24q24ID108229
TT_t0808q24q24ID108230 TT_t0808q24q24ID108231 TT_t0808q24q24ID108232 TT_t0808q24q24ID108233 TT_t0808q24q24ID6710
TT_t0810q24q26ID107802 TT_t0811q24p13ID107828 TT_t0811q24p13ID107829 TT_t0814q24q11ID6712 TT_t0814q24q11ID6713
TT_t0814q24q11ID6714 TT_t0818q24q12ID6715


External links

Nomenclature
HGNC (Hugo)PVT1   9709
Cards
Entrez_Gene (NCBI)PVT1  5820  Pvt1 oncogene
AliasesLINC00079; MIR1204HG; NCRNA00079; onco-lncRNA-100
GeneCards (Weizmann)PVT1
Ensembl hg19 (Hinxton)ENSG00000249859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249859 [Gene_View]  ENSG00000249859 [Sequence]  chr8:127794533-128101253 [Contig_View]  PVT1 [Vega]
ICGC DataPortalENSG00000249859
TCGA cBioPortalPVT1
AceView (NCBI)PVT1
Genatlas (Paris)PVT1
WikiGenes5820
SOURCE (Princeton)PVT1
Genetics Home Reference (NIH)PVT1
Genomic and cartography
GoldenPath hg38 (UCSC)PVT1  -     chr8:127794533-128101253 +  8q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PVT1  -     8q24.21   [Description]    (hg19-Feb_2009)
GoldenPathPVT1 - 8q24.21 [CytoView hg19]  PVT1 - 8q24.21 [CytoView hg38]
ImmunoBaseENSG00000249859
Mapping of homologs : NCBIPVT1 [Mapview hg19]  PVT1 [Mapview hg38]
OMIM165140   
Gene and transcription
Genbank (Entrez)AK128687 AK129745 BC033263 BC041065 BM821521
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PVT1
Cluster EST : UnigeneHs.675281 [ NCBI ]
CGAP (NCI)Hs.675281
Alternative Splicing GalleryENSG00000249859
Gene ExpressionPVT1 [ NCBI-GEO ]   PVT1 [ EBI - ARRAY_EXPRESS ]   PVT1 [ SEEK ]   PVT1 [ MEM ]
Gene Expression Viewer (FireBrowse)PVT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)5820
GTEX Portal (Tissue expression)PVT1
Human Protein AtlasENSG00000249859-PVT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PVT1
DMDM Disease mutations5820
Blocks (Seattle)PVT1
Human Protein Atlas [tissue]ENSG00000249859-PVT1 [tissue]
IPIIPI00796092   
Protein Interaction databases
FunCoupENSG00000249859
BioGRIDPVT1
STRING (EMBL)PVT1
ZODIACPVT1
Ontologies - Pathways
Huge Navigator PVT1 [HugePedia]
snp3D : Map Gene to Disease5820
BioCentury BCIQPVT1
ClinGenPVT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5820
Chemical/Pharm GKB GenePA34053
Clinical trialPVT1
Miscellaneous
canSAR (ICR)PVT1 (select the gene name)
DataMed IndexPVT1
Probes
Litterature
PubMed136 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePVT1
EVEXPVT1
GoPubMedPVT1
iHOPPVT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 26 18:25:22 CEST 2019

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