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PVT1 (Pvt1 oncogene (non-protein coding))

Identity

Alias_namespvt-1 (murine) oncogene homolog, MYC activator
Pvt1 oncogene homolog (mouse)
Alias_symbol (synonym)NCRNA00079
LINC00079
onco-lncRNA-100
Other alias
HGNC (Hugo) PVT1
LocusID (NCBI) 5820
Atlas_Id 137
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 128806779 and ends at 129113499 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AKT3 (1q43) / PVT1 (8q24.21)APIP (11p13) / PVT1 (8q24.21)CLPTM1L (5p15.33) / PVT1 (8q24.21)
EXOC4 (7q33) / PVT1 (8q24.21)GSDMC (8q24.21) / PVT1 (8q24.21)IGK (14q32.33) / PVT1 (8q24.21)
IGL (22q11.22) / PVT1 (8q24.21)IGLV3-10 () / PVT1 (8q24.21)MIR1204 (8q24.21) / PVT1 (8q24.21)
NARS (18q21.31) / PVT1 (8q24.21)PVT1 (8q24.21) / ANXA2 (15q22.2)PVT1 (8q24.21) / ARHGEF3 (3p14.3)
PVT1 (8q24.21) / ASAP1 (8q24.21)PVT1 (8q24.21) / ATE1 (10q26.13)PVT1 (8q24.21) / CCNB1IP1 (14q11.2)
PVT1 (8q24.21) / CHD7 (8q12.2)PVT1 (8q24.21) / CLVS1 (8q12.3)PVT1 (8q24.21) / COL6A1 (21q22.3)
PVT1 (8q24.21) / EYA1 (8q13.3)PVT1 (8q24.21) / LY6H (8q24.3)PVT1 (8q24.21) / MYC (8q24.21)
PVT1 (8q24.21) / MYH7 (14q11.2)PVT1 (8q24.21) / NBEA (13q13.3)PVT1 (8q24.21) / NDRG1 (8q24.22)
PVT1 (8q24.21) / NOL4 (18q12.1)PVT1 (8q24.21) / NSMCE2 (8q24.13)PVT1 (8q24.21) / PDHX (11p13)
PVT1 (8q24.21) / PLPP4 (10q26.12)PVT1 (8q24.21) / PVT1 (8q24.21)PVT1 (8q24.21) / SCCPDH (1q44)
PVT1 (8q24.21) / SLC7A7 (14q11.2)PVT1 (8q24.21) / SMARCA2 (9p24.3)PVT1 (8q24.21) / WWOX (16q23.1)
PVT1 (8q24.21) / ZCCHC7 (9p13.2)PVT1 (8q24.21) / abParts ()RFTN1 (3p25.1) / PVT1 (8q24.21)
RNF44 (5q35.2) / PVT1 (8q24.21)SAMD12 (8q24.12) / PVT1 (8q24.21)TRA () / PVT1 (8q24.21)
TRD () / PVT1 (8q24.21)UGCG (9q31.3) / PVT1 (8q24.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(3;8)(q26;q24) PVT1/MECOM


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)PVT1   9709
Cards
Entrez_Gene (NCBI)PVT1  5820  Pvt1 oncogene (non-protein coding)
AliasesLINC00079; NCRNA00079; onco-lncRNA-100
GeneCards (Weizmann)PVT1
Ensembl hg19 (Hinxton)ENSG00000249859 [Gene_View]  chr8:128806779-129113499 [Contig_View]  PVT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000249859 [Gene_View]  chr8:128806779-129113499 [Contig_View]  PVT1 [Vega]
ICGC DataPortalENSG00000249859
TCGA cBioPortalPVT1
AceView (NCBI)PVT1
Genatlas (Paris)PVT1
WikiGenes5820
SOURCE (Princeton)PVT1
Genetics Home Reference (NIH)PVT1
Genomic and cartography
GoldenPath hg19 (UCSC)PVT1  -     chr8:128806779-129113499 +  8q24.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PVT1  -     8q24.21   [Description]    (hg38-Dec_2013)
EnsemblPVT1 - 8q24.21 [CytoView hg19]  PVT1 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBIPVT1 [Mapview hg19]  PVT1 [Mapview hg38]
OMIM165140   
Gene and transcription
Genbank (Entrez)AK128687 AK129745 BC033263 BC041065 BM821521
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)PVT1
Cluster EST : UnigeneHs.675281 [ NCBI ]
CGAP (NCI)Hs.675281
Alternative Splicing GalleryENSG00000249859
Gene ExpressionPVT1 [ NCBI-GEO ]   PVT1 [ EBI - ARRAY_EXPRESS ]   PVT1 [ SEEK ]   PVT1 [ MEM ]
Gene Expression Viewer (FireBrowse)PVT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)5820
GTEX Portal (Tissue expression)PVT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PVT1
DMDM Disease mutations5820
Blocks (Seattle)PVT1
Human Protein AtlasENSG00000249859
IPIIPI00796092   
Protein Interaction databases
FunCoupENSG00000249859
BioGRIDPVT1
STRING (EMBL)PVT1
ZODIACPVT1
Ontologies - Pathways
Huge Navigator PVT1 [HugePedia]
snp3D : Map Gene to Disease5820
BioCentury BCIQPVT1
ClinGenPVT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5820
Chemical/Pharm GKB GenePA34053
Clinical trialPVT1
Miscellaneous
canSAR (ICR)PVT1 (select the gene name)
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePVT1
EVEXPVT1
GoPubMedPVT1
iHOPPVT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:16:20 CEST 2017

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