Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PWRN1 (Prader-Willi region non-protein coding RNA 1)

Identity

Alias (NCBI)NCRNA00198
HGNC (Hugo) PWRN1
HGNC Alias symbNCRNA00198
HGNC Alias namenon-protein coding RNA 198
LocusID (NCBI) 791114
Atlas_Id 72415
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 24558157 and ends at 24587779 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP8B4 (15q21.2) / PWRN1 (15q11.2)PWRN1 (15q11.2) / UBN2 (7q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PWRN1   33235
Cards
Entrez_Gene (NCBI)PWRN1  791114  Prader-Willi region non-protein coding RNA 1
AliasesNCRNA00198
GeneCards (Weizmann)PWRN1
Ensembl hg19 (Hinxton)ENSG00000259905 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259905 [Gene_View]  ENSG00000259905 [Sequence]  chr15:24558157-24587779 [Contig_View]  PWRN1 [Vega]
ICGC DataPortalENSG00000259905
TCGA cBioPortalPWRN1
AceView (NCBI)PWRN1
Genatlas (Paris)PWRN1
WikiGenes791114
SOURCE (Princeton)PWRN1
Genetics Home Reference (NIH)PWRN1
Genomic and cartography
GoldenPath hg38 (UCSC)PWRN1  -     chr15:24558157-24587779 +  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PWRN1  -     15q11.2   [Description]    (hg19-Feb_2009)
GoldenPathPWRN1 - 15q11.2 [CytoView hg19]  PWRN1 - 15q11.2 [CytoView hg38]
ImmunoBaseENSG00000259905
genome Data Viewer NCBIPWRN1 [Mapview hg19]  
OMIM176270   611215   
Gene and transcription
Genbank (Entrez)BC034815 BC037352
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PWRN1
Alternative Splicing GalleryENSG00000259905
Gene ExpressionPWRN1 [ NCBI-GEO ]   PWRN1 [ EBI - ARRAY_EXPRESS ]   PWRN1 [ SEEK ]   PWRN1 [ MEM ]
Gene Expression Viewer (FireBrowse)PWRN1 [ Firebrowse - Broad ]
GenevisibleExpression of PWRN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)791114
GTEX Portal (Tissue expression)PWRN1
Human Protein AtlasENSG00000259905-PWRN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PWRN1
DMDM Disease mutations791114
Blocks (Seattle)PWRN1
Human Protein Atlas [tissue]ENSG00000259905-PWRN1 [tissue]
Protein Interaction databases
FunCoupENSG00000259905
BioGRIDPWRN1
STRING (EMBL)PWRN1
ZODIACPWRN1
Ontologies - Pathways
Huge Navigator PWRN1 [HugePedia]
snp3D : Map Gene to Disease791114
BioCentury BCIQPWRN1
ClinGenPWRN1
Clinical trials, drugs, therapy
Protein Interactions : CTD791114
Pharm GKB GenePA162400498
Clinical trialPWRN1
Miscellaneous
canSAR (ICR)PWRN1 (select the gene name)
HarmonizomePWRN1
DataMed IndexPWRN1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePWRN1
EVEXPWRN1
GoPubMedPWRN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:24:35 CEST 2020

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