Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PWRN1 (Prader-Willi region non-protein coding RNA 1)

Identity

Alias_symbol (synonym)NCRNA00198
Other alias
HGNC (Hugo) PWRN1
LocusID (NCBI) 791114
Atlas_Id 72415
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 24803304 and ends at 24832926 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATP8B4 (15q21.2) / PWRN1 (15q11.2)PWRN1 (15q11.2) / UBN2 (7q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PWRN1   33235
Cards
Entrez_Gene (NCBI)PWRN1  791114  Prader-Willi region non-protein coding RNA 1
AliasesNCRNA00198
GeneCards (Weizmann)PWRN1
Ensembl hg19 (Hinxton)ENSG00000259905 [Gene_View]  chr15:24803304-24832926 [Contig_View]  PWRN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000259905 [Gene_View]  chr15:24803304-24832926 [Contig_View]  PWRN1 [Vega]
ICGC DataPortalENSG00000259905
TCGA cBioPortalPWRN1
AceView (NCBI)PWRN1
Genatlas (Paris)PWRN1
WikiGenes791114
SOURCE (Princeton)PWRN1
Genetics Home Reference (NIH)PWRN1
Genomic and cartography
GoldenPath hg19 (UCSC)PWRN1  -     chr15:24803304-24832926 +  15q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PWRN1  -     15q11.2   [Description]    (hg38-Dec_2013)
EnsemblPWRN1 - 15q11.2 [CytoView hg19]  PWRN1 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBIPWRN1 [Mapview hg19]  PWRN1 [Mapview hg38]
OMIM176270   611215   
Gene and transcription
Genbank (Entrez)BC034815 BC037352 HG506771 HG506772 HG506773
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_016177 NT_010194 NW_004929397
Consensus coding sequences : CCDS (NCBI)PWRN1
Cluster EST : UnigeneHs.720900 [ NCBI ]
CGAP (NCI)Hs.720900
Alternative Splicing GalleryENSG00000259905
Gene ExpressionPWRN1 [ NCBI-GEO ]   PWRN1 [ EBI - ARRAY_EXPRESS ]   PWRN1 [ SEEK ]   PWRN1 [ MEM ]
Gene Expression Viewer (FireBrowse)PWRN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)791114
GTEX Portal (Tissue expression)PWRN1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PWRN1
DMDM Disease mutations791114
Blocks (Seattle)PWRN1
Human Protein AtlasENSG00000259905
Protein Interaction databases
FunCoupENSG00000259905
BioGRIDPWRN1
STRING (EMBL)PWRN1
ZODIACPWRN1
Ontologies - Pathways
Huge Navigator PWRN1 [HugePedia]
snp3D : Map Gene to Disease791114
BioCentury BCIQPWRN1
ClinGenPWRN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD791114
Chemical/Pharm GKB GenePA162400498
Clinical trialPWRN1
Miscellaneous
canSAR (ICR)PWRN1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePWRN1
EVEXPWRN1
GoPubMedPWRN1
iHOPPWRN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:17 CET 2017

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