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PWWP2A (PWWP domain containing 2A)

Identity

Alias_symbol (synonym)KIAA1935
Other aliasMST101
HGNC (Hugo) PWWP2A
LocusID (NCBI) 114825
Atlas_Id 55062
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 159518347 and ends at 159546452 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PWWP2A (5q33.3) / AKIP1 (11p15.4)PWWP2A (5q33.3) / GOPC (6q22.1)PWWP2A (5q33.3) / IQGAP2 (5q13.3)
PWWP2A (5q33.3) / ROS1 (6q22.1)PWWP2A 5q33.3 / ROS1 6q22.1PWWP2A 5q33.3 / IQGAP2 5q13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PWWP2A   29406
Cards
Entrez_Gene (NCBI)PWWP2A  114825  PWWP domain containing 2A
AliasesMST101
GeneCards (Weizmann)PWWP2A
Ensembl hg19 (Hinxton)ENSG00000170234 [Gene_View]  chr5:159518347-159546452 [Contig_View]  PWWP2A [Vega]
Ensembl hg38 (Hinxton)ENSG00000170234 [Gene_View]  chr5:159518347-159546452 [Contig_View]  PWWP2A [Vega]
ICGC DataPortalENSG00000170234
TCGA cBioPortalPWWP2A
AceView (NCBI)PWWP2A
Genatlas (Paris)PWWP2A
WikiGenes114825
SOURCE (Princeton)PWWP2A
Genetics Home Reference (NIH)PWWP2A
Genomic and cartography
GoldenPath hg19 (UCSC)PWWP2A  -     chr5:159518347-159546452 -  5q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PWWP2A  -     5q33.3   [Description]    (hg38-Dec_2013)
EnsemblPWWP2A - 5q33.3 [CytoView hg19]  PWWP2A - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIPWWP2A [Mapview hg19]  PWWP2A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067522 AF173385 AI972512 AK055921 AV720552
RefSeq transcript (Entrez)NM_001130864 NM_001267035 NM_052927
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)PWWP2A
Cluster EST : UnigeneHs.744960 [ NCBI ]
CGAP (NCI)Hs.744960
Alternative Splicing GalleryENSG00000170234
Gene ExpressionPWWP2A [ NCBI-GEO ]   PWWP2A [ EBI - ARRAY_EXPRESS ]   PWWP2A [ SEEK ]   PWWP2A [ MEM ]
Gene Expression Viewer (FireBrowse)PWWP2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114825
GTEX Portal (Tissue expression)PWWP2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N64
Splice isoforms : SwissVarQ96N64
PhosPhoSitePlusQ96N64
Domaine pattern : Prosite (Expaxy)PWWP (PS50812)   
Domains : Interpro (EBI)PWWP_dom   
Domain families : Pfam (Sanger)PWWP (PF00855)   
Domain families : Pfam (NCBI)pfam00855   
Conserved Domain (NCBI)PWWP2A
DMDM Disease mutations114825
Blocks (Seattle)PWWP2A
SuperfamilyQ96N64
Human Protein AtlasENSG00000170234
Peptide AtlasQ96N64
IPIIPI00871452   IPI00855754   IPI00385090   IPI00979901   IPI00980477   IPI00976534   IPI00978345   
Protein Interaction databases
DIP (DOE-UCLA)Q96N64
IntAct (EBI)Q96N64
FunCoupENSG00000170234
BioGRIDPWWP2A
STRING (EMBL)PWWP2A
ZODIACPWWP2A
Ontologies - Pathways
QuickGOQ96N64
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkPWWP2A
Atlas of Cancer Signalling NetworkPWWP2A
Wikipedia pathwaysPWWP2A
Orthology - Evolution
OrthoDB114825
GeneTree (enSembl)ENSG00000170234
Phylogenetic Trees/Animal Genes : TreeFamPWWP2A
HOVERGENQ96N64
HOGENOMQ96N64
Homologs : HomoloGenePWWP2A
Homology/Alignments : Family Browser (UCSC)PWWP2A
Gene fusions - Rearrangements
Fusion : MitelmanPWWP2A/IQGAP2 [5q33.3/5q13.3]  
Fusion: TCGAPWWP2A 5q33.3 IQGAP2 5q13.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPWWP2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PWWP2A
dbVarPWWP2A
ClinVarPWWP2A
1000_GenomesPWWP2A 
Exome Variant ServerPWWP2A
ExAC (Exome Aggregation Consortium)PWWP2A (select the gene name)
Genetic variants : HAPMAP114825
Genomic Variants (DGV)PWWP2A [DGVbeta]
DECIPHER (Syndromes)5:159518347-159546452  ENSG00000170234
CONAN: Copy Number AnalysisPWWP2A 
Mutations
ICGC Data PortalPWWP2A 
TCGA Data PortalPWWP2A 
Broad Tumor PortalPWWP2A
OASIS PortalPWWP2A [ Somatic mutations - Copy number]
Cancer Gene: CensusPWWP2A 
Somatic Mutations in Cancer : COSMICPWWP2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPWWP2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PWWP2A
DgiDB (Drug Gene Interaction Database)PWWP2A
DoCM (Curated mutations)PWWP2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PWWP2A (select a term)
intoGenPWWP2A
Cancer3DPWWP2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPWWP2A
Genetic Testing Registry PWWP2A
NextProtQ96N64 [Medical]
TSGene114825
GENETestsPWWP2A
Huge Navigator PWWP2A [HugePedia]
snp3D : Map Gene to Disease114825
BioCentury BCIQPWWP2A
ClinGenPWWP2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114825
Chemical/Pharm GKB GenePA162400500
Clinical trialPWWP2A
Miscellaneous
canSAR (ICR)PWWP2A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePWWP2A
EVEXPWWP2A
GoPubMedPWWP2A
iHOPPWWP2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:16:20 CEST 2017

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