Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PXDNL (peroxidasin like)

Identity

Alias_namesperoxidasin homolog-like (Drosophila)
peroxidasin homolog (Drosophila)-like
Alias_symbol (synonym)FLJ25471
PMR1
Other aliasPRM1
VPO2
HGNC (Hugo) PXDNL
LocusID (NCBI) 137902
Atlas_Id 72419
Location 8q11.22  [Link to chromosome band 8q11]
Location_base_pair Starts at 51319577 and ends at 51809445 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM168A (11q13.4) / PXDNL (8q11.22)FOXP1 (3p13) / PXDNL (8q11.22)PXDNL (8q11.22) / USP8 (15q21.2)
FOXP1 PXDNLFAM168A PXDNL

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PXDNL   26359
Cards
Entrez_Gene (NCBI)PXDNL  137902  peroxidasin like
AliasesPMR1; PRM1; VPO2
GeneCards (Weizmann)PXDNL
Ensembl hg19 (Hinxton)ENSG00000147485 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147485 [Gene_View]  chr8:51319577-51809445 [Contig_View]  PXDNL [Vega]
ICGC DataPortalENSG00000147485
TCGA cBioPortalPXDNL
AceView (NCBI)PXDNL
Genatlas (Paris)PXDNL
WikiGenes137902
SOURCE (Princeton)PXDNL
Genetics Home Reference (NIH)PXDNL
Genomic and cartography
GoldenPath hg38 (UCSC)PXDNL  -     chr8:51319577-51809445 -  8q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PXDNL  -     8q11.22   [Description]    (hg19-Feb_2009)
EnsemblPXDNL - 8q11.22 [CytoView hg19]  PXDNL - 8q11.22 [CytoView hg38]
Mapping of homologs : NCBIPXDNL [Mapview hg19]  PXDNL [Mapview hg38]
OMIM615904   
Gene and transcription
Genbank (Entrez)AI127081 AK058200 AK131524 AY877349 BC132813
RefSeq transcript (Entrez)NM_144651
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PXDNL
Cluster EST : UnigeneHs.444882 [ NCBI ]
CGAP (NCI)Hs.444882
Alternative Splicing GalleryENSG00000147485
Gene ExpressionPXDNL [ NCBI-GEO ]   PXDNL [ EBI - ARRAY_EXPRESS ]   PXDNL [ SEEK ]   PXDNL [ MEM ]
Gene Expression Viewer (FireBrowse)PXDNL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue exprescion)4/>137902
GTEX Portal (Tissue expression)PXDNL
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1KZ92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1KZ92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1KZ92
Splice isoforms : SwissVarA1KZ92
Catalytic activity : Enzyme1.11.1.7 [ Enzyme-Expasy ]   1.11.1.71.11.1.7 [ IntEnz-EBI ]   1.11.1.7 [ BRENDA ]   1.11.1.7 [ KEGG ]   
PhosPhoSitePlusA1KZ92
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    LRR (PS51450)    PEROXIDASE_3 (PS50292)    VWFC_1 (PS01208)    VWFC_2 (PS50184)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Haem_peroxidase    Haem_peroxidase_animal    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    PXDNL    VWF_dom   
Domain families : Pfam (Sanger)An_peroxidase (PF03098)    I-set (PF07679)    LRR_8 (PF13855)    VWC (PF00093)   
Domain families : Pfam (NCBI)pfam03098    pfam07679    pfam13855    pfam00093   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  LRR_TYP (SM00369)  LRRCT (SM00082)  VWC (SM00214)  
Conserved Domain (NCBI)PXDNL
DMDM Disease mutations137902
Blocks (Seattle)PXDNL
SuperfamilyA1KZ92
Human Protein AtlasENSG00000147485
Peptide AtlasA1KZ92
HPRD08693
IPIIPI00065049   IPI00890814   IPI00981534   
Protein Interaction databases
DIP (DOE-UCLA)A1KZ92
IntAct (EBI)A1KZ92
FunCoupENSG00000147485
BioGRIDPXDNL
STRING (EMBL)PXDNL
ZODIACPXDNL
Ontologies - Pathways
QuickGOA1KZ92
Ontology : AmiGOendonuclease activity  peroxidase activity  peroxidase activity  extracellular space  extracellular space  cytoplasm  response to oxidative stress  heme binding  hydrogen peroxide catabolic process  metal ion binding  oxidation-reduction process  nucleic acid phosphodiester bond hydrolysis  cellular oxidant detoxification  
Ontology : EGO-EBIendonuclease activity  peroxidase activity  peroxidase activity  extracellular space  extracellular space  cytoplasm  response to oxidative stress  heme binding  hydrogen peroxide catabolic process  metal ion binding  oxidation-reduction process  nucleic acid phosphodiester bond hydrolysis  cellular oxidant detoxification  
NDEx NetworkPXDNL
Atlas of Cancer Signalling NetworkPXDNL
Wikipedia pathwaysPXDNL
Orthology - Evolution
OrthoDB137902
GeneTree (enSembl)ENSG00000147485
Phylogenetic Trees/Animal Genes : TreeFamPXDNL
HOVERGENA1KZ92
HOGENOMA1KZ92
Homologs : HomoloGenePXDNL
Homology/Alignments : Family Browser (UCSC)PXDNL
Gene fusions - Rearrangements
Fusion: TCGAFOXP1 PXDNL
Fusion: TCGAFAM168A PXDNL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPXDNL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PXDNL
dbVarPXDNL
ClinVarPXDNL
1000_GenomesPXDNL 
Exome Variant ServerPXDNL
ExAC (Exome Aggregation Consortium)PXDNL (select the gene name)
Genetic variants : HAPMAP137902
Genomic Variants (DGV)PXDNL [DGVbeta]
DECIPHERPXDNL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPXDNL 
Mutations
ICGC Data PortalPXDNL 
TCGA Data PortalPXDNL 
Broad Tumor PortalPXDNL
OASIS PortalPXDNL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPXDNL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPXDNL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PXDNL
DgiDB (Drug Gene Interaction Database)PXDNL
DoCM (Curated mutations)PXDNL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PXDNL (select a term)
intoGenPXDNL
Cancer3DPXDNL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615904   
Orphanet
MedgenPXDNL
Genetic Testing Registry PXDNL
NextProtA1KZ92 [Medical]
TSGene137902
GENETestsPXDNL
Target ValidationPXDNL
Huge Navigator PXDNL [HugePedia]
snp3D : Map Gene to Disease137902
BioCentury BCIQPXDNL
ClinGenPXDNL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD137902
Chemical/Pharm GKB GenePA142671110
Clinical trialPXDNL
Miscellaneous
canSAR (ICR)PXDNL (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePXDNL
EVEXPXDNL
GoPubMedPXDNL
iHOPPXDNL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:35:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.