Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PXMP4 (peroxisomal membrane protein 4)

Identity

Alias_namesperoxisomal membrane protein 4 (24kD)
peroxisomal membrane protein 4, 24kDa
Alias_symbol (synonym)PMP24
Other alias
HGNC (Hugo) PXMP4
LocusID (NCBI) 11264
Atlas_Id 72421
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 33702744 and ends at 33720330 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PXMP4 (20q11.22) / RBM39 (20q11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PXMP4   15920
Cards
Entrez_Gene (NCBI)PXMP4  11264  peroxisomal membrane protein 4
AliasesPMP24
GeneCards (Weizmann)PXMP4
Ensembl hg19 (Hinxton)ENSG00000101417 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101417 [Gene_View]  chr20:33702744-33720330 [Contig_View]  PXMP4 [Vega]
ICGC DataPortalENSG00000101417
TCGA cBioPortalPXMP4
AceView (NCBI)PXMP4
Genatlas (Paris)PXMP4
WikiGenes11264
SOURCE (Princeton)PXMP4
Genetics Home Reference (NIH)PXMP4
Genomic and cartography
GoldenPath hg38 (UCSC)PXMP4  -     chr20:33702744-33720330 -  20q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PXMP4  -     20q11.22   [Description]    (hg19-Feb_2009)
EnsemblPXMP4 - 20q11.22 [CytoView hg19]  PXMP4 - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIPXMP4 [Mapview hg19]  PXMP4 [Mapview hg38]
OMIM616397   
Gene and transcription
Genbank (Entrez)AF072864 AI985147 AK023879 AK128879 AK297018
RefSeq transcript (Entrez)NM_007238 NM_183397
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PXMP4
Cluster EST : UnigeneHs.654857 [ NCBI ]
CGAP (NCI)Hs.654857
Alternative Splicing GalleryENSG00000101417
Gene ExpressionPXMP4 [ NCBI-GEO ]   PXMP4 [ EBI - ARRAY_EXPRESS ]   PXMP4 [ SEEK ]   PXMP4 [ MEM ]
Gene Expression Viewer (FireBrowse)PXMP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11264
GTEX Portal (Tissue expression)PXMP4
Human Protein AtlasENSG00000101417-PXMP4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6I8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6I8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6I8
Splice isoforms : SwissVarQ9Y6I8
PhosPhoSitePlusQ9Y6I8
Domains : Interpro (EBI)Pmp4    Tim17/Tim22/Tim23/PMP24   
Domain families : Pfam (Sanger)Tim17 (PF02466)   
Domain families : Pfam (NCBI)pfam02466   
Conserved Domain (NCBI)PXMP4
DMDM Disease mutations11264
Blocks (Seattle)PXMP4
SuperfamilyQ9Y6I8
Human Protein Atlas [tissue]ENSG00000101417-PXMP4 [tissue]
Peptide AtlasQ9Y6I8
HPRD10177
IPIIPI00218925   IPI00374131   IPI00908303   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6I8
IntAct (EBI)Q9Y6I8
FunCoupENSG00000101417
BioGRIDPXMP4
STRING (EMBL)PXMP4
ZODIACPXMP4
Ontologies - Pathways
QuickGOQ9Y6I8
Ontology : AmiGOprotein binding  peroxisome  peroxisomal membrane  peroxisomal membrane  biological_process  integral component of membrane  
Ontology : EGO-EBIprotein binding  peroxisome  peroxisomal membrane  peroxisomal membrane  biological_process  integral component of membrane  
Pathways : KEGGPeroxisome   
NDEx NetworkPXMP4
Atlas of Cancer Signalling NetworkPXMP4
Wikipedia pathwaysPXMP4
Orthology - Evolution
OrthoDB11264
GeneTree (enSembl)ENSG00000101417
Phylogenetic Trees/Animal Genes : TreeFamPXMP4
HOVERGENQ9Y6I8
HOGENOMQ9Y6I8
Homologs : HomoloGenePXMP4
Homology/Alignments : Family Browser (UCSC)PXMP4
Gene fusions - Rearrangements
Fusion: Tumor Portal PXMP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPXMP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PXMP4
dbVarPXMP4
ClinVarPXMP4
1000_GenomesPXMP4 
Exome Variant ServerPXMP4
ExAC (Exome Aggregation Consortium)ENSG00000101417
GNOMAD BrowserENSG00000101417
Genetic variants : HAPMAP11264
Genomic Variants (DGV)PXMP4 [DGVbeta]
DECIPHERPXMP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPXMP4 
Mutations
ICGC Data PortalPXMP4 
TCGA Data PortalPXMP4 
Broad Tumor PortalPXMP4
OASIS PortalPXMP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPXMP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPXMP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PXMP4
DgiDB (Drug Gene Interaction Database)PXMP4
DoCM (Curated mutations)PXMP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PXMP4 (select a term)
intoGenPXMP4
Cancer3DPXMP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616397   
Orphanet
MedgenPXMP4
Genetic Testing Registry PXMP4
NextProtQ9Y6I8 [Medical]
TSGene11264
GENETestsPXMP4
Target ValidationPXMP4
Huge Navigator PXMP4 [HugePedia]
snp3D : Map Gene to Disease11264
BioCentury BCIQPXMP4
ClinGenPXMP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11264
Chemical/Pharm GKB GenePA34061
Clinical trialPXMP4
Miscellaneous
canSAR (ICR)PXMP4 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePXMP4
EVEXPXMP4
GoPubMedPXMP4
iHOPPXMP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:24:12 CET 2017

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