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PXYLP1 (2-phosphoxylose phosphatase 1)

Identity

Alias_namesACPL2
acid phosphatase-like 2
Alias_symbol (synonym)FLJ23751
Other aliasHEL124
XYLP
HGNC (Hugo) PXYLP1
LocusID (NCBI) 92370
Atlas_Id 72424
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 141231825 and ends at 141294903 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PXYLP1   26303
Cards
Entrez_Gene (NCBI)PXYLP1  92370  2-phosphoxylose phosphatase 1
AliasesACPL2; HEL124; XYLP
GeneCards (Weizmann)PXYLP1
Ensembl hg19 (Hinxton)ENSG00000155893 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155893 [Gene_View]  chr3:141231825-141294903 [Contig_View]  PXYLP1 [Vega]
ICGC DataPortalENSG00000155893
TCGA cBioPortalPXYLP1
AceView (NCBI)PXYLP1
Genatlas (Paris)PXYLP1
WikiGenes92370
SOURCE (Princeton)PXYLP1
Genetics Home Reference (NIH)PXYLP1
Genomic and cartography
GoldenPath hg38 (UCSC)PXYLP1  -     chr3:141231825-141294903 +  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PXYLP1  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblPXYLP1 - 3q23 [CytoView hg19]  PXYLP1 - 3q23 [CytoView hg38]
Mapping of homologs : NCBIPXYLP1 [Mapview hg19]  PXYLP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB827640 AK074331 AK296292 AK297790 AK316121
RefSeq transcript (Entrez)NM_001037172 NM_001282728 NM_152282
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PXYLP1
Cluster EST : UnigeneHs.657887 [ NCBI ]
CGAP (NCI)Hs.657887
Alternative Splicing GalleryENSG00000155893
Gene ExpressionPXYLP1 [ NCBI-GEO ]   PXYLP1 [ EBI - ARRAY_EXPRESS ]   PXYLP1 [ SEEK ]   PXYLP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PXYLP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92370
GTEX Portal (Tissue expression)PXYLP1
Human Protein AtlasENSG00000155893-PXYLP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TE99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TE99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TE99
Splice isoforms : SwissVarQ8TE99
PhosPhoSitePlusQ8TE99
Domains : Interpro (EBI)His_Pase_clade-2    His_PPase_superfam   
Domain families : Pfam (Sanger)His_Phos_2 (PF00328)   
Domain families : Pfam (NCBI)pfam00328   
Conserved Domain (NCBI)PXYLP1
DMDM Disease mutations92370
Blocks (Seattle)PXYLP1
SuperfamilyQ8TE99
Human Protein Atlas [tissue]ENSG00000155893-PXYLP1 [tissue]
Peptide AtlasQ8TE99
HPRD08675
IPIIPI00152681   IPI00017684   IPI00967147   IPI00965512   IPI00792585   IPI00790697   IPI00966400   IPI00966890   IPI00967701   
Protein Interaction databases
DIP (DOE-UCLA)Q8TE99
IntAct (EBI)Q8TE99
FunCoupENSG00000155893
BioGRIDPXYLP1
STRING (EMBL)PXYLP1
ZODIACPXYLP1
Ontologies - Pathways
QuickGOQ8TE99
Ontology : AmiGOGolgi membrane  acid phosphatase activity  protein binding  Golgi apparatus  glycosaminoglycan biosynthetic process  positive regulation of heparan sulfate proteoglycan biosynthetic process  integral component of membrane  dephosphorylation  phosphatase activity  chondroitin sulfate proteoglycan biosynthetic process  
Ontology : EGO-EBIGolgi membrane  acid phosphatase activity  protein binding  Golgi apparatus  glycosaminoglycan biosynthetic process  positive regulation of heparan sulfate proteoglycan biosynthetic process  integral component of membrane  dephosphorylation  phosphatase activity  chondroitin sulfate proteoglycan biosynthetic process  
NDEx NetworkPXYLP1
Atlas of Cancer Signalling NetworkPXYLP1
Wikipedia pathwaysPXYLP1
Orthology - Evolution
OrthoDB92370
GeneTree (enSembl)ENSG00000155893
Phylogenetic Trees/Animal Genes : TreeFamPXYLP1
HOVERGENQ8TE99
HOGENOMQ8TE99
Homologs : HomoloGenePXYLP1
Homology/Alignments : Family Browser (UCSC)PXYLP1
Gene fusions - Rearrangements
Fusion: Tumor Portal PXYLP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPXYLP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PXYLP1
dbVarPXYLP1
ClinVarPXYLP1
1000_GenomesPXYLP1 
Exome Variant ServerPXYLP1
ExAC (Exome Aggregation Consortium)ENSG00000155893
GNOMAD BrowserENSG00000155893
Genetic variants : HAPMAP92370
Genomic Variants (DGV)PXYLP1 [DGVbeta]
DECIPHERPXYLP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPXYLP1 
Mutations
ICGC Data PortalPXYLP1 
TCGA Data PortalPXYLP1 
Broad Tumor PortalPXYLP1
OASIS PortalPXYLP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPXYLP1
BioMutasearch PXYLP1
DgiDB (Drug Gene Interaction Database)PXYLP1
DoCM (Curated mutations)PXYLP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PXYLP1 (select a term)
intoGenPXYLP1
Cancer3DPXYLP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPXYLP1
Genetic Testing Registry PXYLP1
NextProtQ8TE99 [Medical]
TSGene92370
GENETestsPXYLP1
Target ValidationPXYLP1
Huge Navigator PXYLP1 [HugePedia]
snp3D : Map Gene to Disease92370
BioCentury BCIQPXYLP1
ClinGenPXYLP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92370
Chemical/Pharm GKB GenePA134964387
Clinical trialPXYLP1
Miscellaneous
canSAR (ICR)PXYLP1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePXYLP1
EVEXPXYLP1
GoPubMedPXYLP1
iHOPPXYLP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:24:13 CET 2017

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