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PYCARD-AS1 (PYCARD antisense RNA 1)

Identity

Alias_namesC16orf98
PYCARDOS
chromosome 16 open reading frame 98
PYCARD opposite strand
Other alias
HGNC (Hugo) PYCARD-AS1
LocusID (NCBI) 100652740
Atlas_Id 72425
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 31201885 and ends at 31203452 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PYCARD-AS1   45036
Cards
Entrez_Gene (NCBI)PYCARD-AS1  100652740  PYCARD antisense RNA 1
AliasesC16orf98; PYCARDOS
GeneCards (Weizmann)PYCARD-AS1
Ensembl hg19 (Hinxton)ENSG00000261359 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261359 [Gene_View]  chr16:31201885-31203452 [Contig_View]  PYCARD-AS1 [Vega]
ICGC DataPortalENSG00000261359
TCGA cBioPortalPYCARD-AS1
AceView (NCBI)PYCARD-AS1
Genatlas (Paris)PYCARD-AS1
WikiGenes100652740
SOURCE (Princeton)PYCARD-AS1
Genetics Home Reference (NIH)PYCARD-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PYCARD-AS1  -     chr16:31201885-31203452 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PYCARD-AS1  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblPYCARD-AS1 - 16p11.2 [CytoView hg19]  PYCARD-AS1 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIPYCARD-AS1 [Mapview hg19]  PYCARD-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF508251 BX464768
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PYCARD-AS1
Cluster EST : UnigeneHs.550659 [ NCBI ]
CGAP (NCI)Hs.550659
Alternative Splicing GalleryENSG00000261359
Gene ExpressionPYCARD-AS1 [ NCBI-GEO ]   PYCARD-AS1 [ EBI - ARRAY_EXPRESS ]   PYCARD-AS1 [ SEEK ]   PYCARD-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PYCARD-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100652740
GTEX Portal (Tissue expression)PYCARD-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtI3L0S3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtI3L0S3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProI3L0S3
Splice isoforms : SwissVarI3L0S3
PhosPhoSitePlusI3L0S3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PYCARD-AS1
DMDM Disease mutations100652740
Blocks (Seattle)PYCARD-AS1
SuperfamilyI3L0S3
Human Protein AtlasENSG00000261359
Peptide AtlasI3L0S3
Protein Interaction databases
DIP (DOE-UCLA)I3L0S3
IntAct (EBI)I3L0S3
FunCoupENSG00000261359
BioGRIDPYCARD-AS1
STRING (EMBL)PYCARD-AS1
ZODIACPYCARD-AS1
Ontologies - Pathways
QuickGOI3L0S3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkPYCARD-AS1
Atlas of Cancer Signalling NetworkPYCARD-AS1
Wikipedia pathwaysPYCARD-AS1
Orthology - Evolution
OrthoDB100652740
GeneTree (enSembl)ENSG00000261359
Phylogenetic Trees/Animal Genes : TreeFamPYCARD-AS1
HOVERGENI3L0S3
HOGENOMI3L0S3
Homologs : HomoloGenePYCARD-AS1
Homology/Alignments : Family Browser (UCSC)PYCARD-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPYCARD-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PYCARD-AS1
dbVarPYCARD-AS1
ClinVarPYCARD-AS1
1000_GenomesPYCARD-AS1 
Exome Variant ServerPYCARD-AS1
ExAC (Exome Aggregation Consortium)PYCARD-AS1 (select the gene name)
Genetic variants : HAPMAP100652740
Genomic Variants (DGV)PYCARD-AS1 [DGVbeta]
DECIPHERPYCARD-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPYCARD-AS1 
Mutations
ICGC Data PortalPYCARD-AS1 
TCGA Data PortalPYCARD-AS1 
Broad Tumor PortalPYCARD-AS1
OASIS PortalPYCARD-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPYCARD-AS1
BioMutasearch PYCARD-AS1
DgiDB (Drug Gene Interaction Database)PYCARD-AS1
DoCM (Curated mutations)PYCARD-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PYCARD-AS1 (select a term)
intoGenPYCARD-AS1
Cancer3DPYCARD-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPYCARD-AS1
Genetic Testing Registry PYCARD-AS1
NextProtI3L0S3 [Medical]
TSGene100652740
GENETestsPYCARD-AS1
Target ValidationPYCARD-AS1
Huge Navigator PYCARD-AS1 [HugePedia]
snp3D : Map Gene to Disease100652740
BioCentury BCIQPYCARD-AS1
ClinGenPYCARD-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100652740
Chemical/Pharm GKB GenePA166049155
Clinical trialPYCARD-AS1
Miscellaneous
canSAR (ICR)PYCARD-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePYCARD-AS1
EVEXPYCARD-AS1
GoPubMedPYCARD-AS1
iHOPPYCARD-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:43 CEST 2017

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