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PYGO1 (pygopus family PHD finger 1)

Identity

Alias_namespygopus homolog 1 (Drosophila)
Other alias-
HGNC (Hugo) PYGO1
LocusID (NCBI) 26108
Atlas_Id 72431
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 55538881 and ends at 55587978 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PYGO1 (15q21.3) / MAPK6 (15q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PYGO1   30256
Cards
Entrez_Gene (NCBI)PYGO1  26108  pygopus family PHD finger 1
Aliases
GeneCards (Weizmann)PYGO1
Ensembl hg19 (Hinxton)ENSG00000171016 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171016 [Gene_View]  chr15:55538881-55587978 [Contig_View]  PYGO1 [Vega]
ICGC DataPortalENSG00000171016
TCGA cBioPortalPYGO1
AceView (NCBI)PYGO1
Genatlas (Paris)PYGO1
WikiGenes26108
SOURCE (Princeton)PYGO1
Genetics Home Reference (NIH)PYGO1
Genomic and cartography
GoldenPath hg38 (UCSC)PYGO1  -     chr15:55538881-55587978 -  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PYGO1  -     15q21.3   [Description]    (hg19-Feb_2009)
EnsemblPYGO1 - 15q21.3 [CytoView hg19]  PYGO1 - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIPYGO1 [Mapview hg19]  PYGO1 [Mapview hg38]
OMIM606902   
Gene and transcription
Genbank (Entrez)AF457207 AK055370 AK095540 AL049925 AL833463
RefSeq transcript (Entrez)NM_001330326 NM_015617
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PYGO1
Cluster EST : UnigeneHs.256587 [ NCBI ]
CGAP (NCI)Hs.256587
Alternative Splicing GalleryENSG00000171016
Gene ExpressionPYGO1 [ NCBI-GEO ]   PYGO1 [ EBI - ARRAY_EXPRESS ]   PYGO1 [ SEEK ]   PYGO1 [ MEM ]
Gene Expression Viewer (FireBrowse)PYGO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26108
GTEX Portal (Tissue expression)PYGO1
Human Protein AtlasENSG00000171016-PYGO1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3Y4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3Y4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3Y4
Splice isoforms : SwissVarQ9Y3Y4
PhosPhoSitePlusQ9Y3Y4
Domaine pattern : Prosite (Expaxy)ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PHD (PF00628)   
Domain families : Pfam (NCBI)pfam00628   
Domain families : Smart (EMBL)PHD (SM00249)  
Conserved Domain (NCBI)PYGO1
DMDM Disease mutations26108
Blocks (Seattle)PYGO1
PDB (SRS)2VP7    2VPB    2VPD    2VPE    2VPG   
PDB (PDBSum)2VP7    2VPB    2VPD    2VPE    2VPG   
PDB (IMB)2VP7    2VPB    2VPD    2VPE    2VPG   
PDB (RSDB)2VP7    2VPB    2VPD    2VPE    2VPG   
Structural Biology KnowledgeBase2VP7    2VPB    2VPD    2VPE    2VPG   
SCOP (Structural Classification of Proteins)2VP7    2VPB    2VPD    2VPE    2VPG   
CATH (Classification of proteins structures)2VP7    2VPB    2VPD    2VPE    2VPG   
SuperfamilyQ9Y3Y4
Human Protein Atlas [tissue]ENSG00000171016-PYGO1 [tissue]
Peptide AtlasQ9Y3Y4
HPRD06064
IPIIPI00163904   IPI00902857   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3Y4
IntAct (EBI)Q9Y3Y4
FunCoupENSG00000171016
BioGRIDPYGO1
STRING (EMBL)PYGO1
ZODIACPYGO1
Ontologies - Pathways
QuickGOQ9Y3Y4
Ontology : AmiGOkidney development  hematopoietic progenitor cell differentiation  protein binding  nucleoplasm  spermatid nucleus differentiation  zinc ion binding  post-embryonic development  Wnt signaling pathway  protein localization to nucleus  positive regulation of transcription from RNA polymerase II promoter  beta-catenin-TCF complex assembly  
Ontology : EGO-EBIkidney development  hematopoietic progenitor cell differentiation  protein binding  nucleoplasm  spermatid nucleus differentiation  zinc ion binding  post-embryonic development  Wnt signaling pathway  protein localization to nucleus  positive regulation of transcription from RNA polymerase II promoter  beta-catenin-TCF complex assembly  
NDEx NetworkPYGO1
Atlas of Cancer Signalling NetworkPYGO1
Wikipedia pathwaysPYGO1
Orthology - Evolution
OrthoDB26108
GeneTree (enSembl)ENSG00000171016
Phylogenetic Trees/Animal Genes : TreeFamPYGO1
HOVERGENQ9Y3Y4
HOGENOMQ9Y3Y4
Homologs : HomoloGenePYGO1
Homology/Alignments : Family Browser (UCSC)PYGO1
Gene fusions - Rearrangements
Fusion: Tumor Portal PYGO1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPYGO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PYGO1
dbVarPYGO1
ClinVarPYGO1
1000_GenomesPYGO1 
Exome Variant ServerPYGO1
ExAC (Exome Aggregation Consortium)ENSG00000171016
GNOMAD BrowserENSG00000171016
Genetic variants : HAPMAP26108
Genomic Variants (DGV)PYGO1 [DGVbeta]
DECIPHERPYGO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPYGO1 
Mutations
ICGC Data PortalPYGO1 
TCGA Data PortalPYGO1 
Broad Tumor PortalPYGO1
OASIS PortalPYGO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPYGO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPYGO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PYGO1
DgiDB (Drug Gene Interaction Database)PYGO1
DoCM (Curated mutations)PYGO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PYGO1 (select a term)
intoGenPYGO1
Cancer3DPYGO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606902   
Orphanet
MedgenPYGO1
Genetic Testing Registry PYGO1
NextProtQ9Y3Y4 [Medical]
TSGene26108
GENETestsPYGO1
Target ValidationPYGO1
Huge Navigator PYGO1 [HugePedia]
snp3D : Map Gene to Disease26108
BioCentury BCIQPYGO1
ClinGenPYGO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26108
Chemical/Pharm GKB GenePA134875127
Clinical trialPYGO1
Miscellaneous
canSAR (ICR)PYGO1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePYGO1
EVEXPYGO1
GoPubMedPYGO1
iHOPPYGO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:24:14 CET 2017

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