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PYM1 (PYM homolog 1, exon junction complex associated factor)

Identity

Alias_namesWIBG
within bgcn homolog (Drosophila)
Alias_symbol (synonym)PYM
Other alias
HGNC (Hugo) PYM1
LocusID (NCBI) 84305
Atlas_Id 77963
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 56295197 and ends at 56320909 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HOXC10 (12q13.13) / PYM1 (12q13.2)HOXC6 (12q13.13) / PYM1 (12q13.2)HOXC9 (12q13.13) / PYM1 (12q13.2)
PYM1 (12q13.2) / OAZ1 (19p13.3)PYM1 (12q13.2) / PYM1 (12q13.2)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PYM1   30258
Cards
Entrez_Gene (NCBI)PYM1  84305  PYM homolog 1, exon junction complex associated factor
AliasesPYM; WIBG
GeneCards (Weizmann)PYM1
Ensembl hg19 (Hinxton)ENSG00000170473 [Gene_View]  chr12:56295197-56320909 [Contig_View]  PYM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170473 [Gene_View]  chr12:56295197-56320909 [Contig_View]  PYM1 [Vega]
ICGC DataPortalENSG00000170473
TCGA cBioPortalPYM1
AceView (NCBI)PYM1
Genatlas (Paris)PYM1
WikiGenes84305
SOURCE (Princeton)PYM1
Genetics Home Reference (NIH)PYM1
Genomic and cartography
GoldenPath hg19 (UCSC)PYM1  -     chr12:56295197-56320909 -  12q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PYM1  -     12q13.2   [Description]    (hg38-Dec_2013)
EnsemblPYM1 - 12q13.2 [CytoView hg19]  PYM1 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIPYM1 [Mapview hg19]  PYM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001143853 NM_032345
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)PYM1
Cluster EST : UnigeneHs.524488 [ NCBI ]
CGAP (NCI)Hs.524488
Alternative Splicing GalleryENSG00000170473
Gene ExpressionPYM1 [ NCBI-GEO ]   PYM1 [ EBI - ARRAY_EXPRESS ]   PYM1 [ SEEK ]   PYM1 [ MEM ]
Gene Expression Viewer (FireBrowse)PYM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)84305
GTEX Portal (Tissue expression)PYM1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PYM1
DMDM Disease mutations84305
Blocks (Seattle)PYM1
Human Protein AtlasENSG00000170473
HPRD17940
IPIIPI00305092   IPI00790634   IPI00815818   IPI01022711   IPI01022883   IPI01026457   IPI01025977   IPI00743864   
Protein Interaction databases
FunCoupENSG00000170473
BioGRIDPYM1
STRING (EMBL)PYM1
ZODIACPYM1
Ontologies - Pathways
Huge Navigator PYM1 [HugePedia]
snp3D : Map Gene to Disease84305
BioCentury BCIQPYM1
ClinGenPYM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84305
Chemical/Pharm GKB GenePA142670574
Clinical trialPYM1
Miscellaneous
canSAR (ICR)PYM1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePYM1
EVEXPYM1
GoPubMedPYM1
iHOPPYM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:21 CET 2017

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