Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PYROXD2 (pyridine nucleotide-disulphide oxidoreductase domain 2)

Identity

Alias_namesC10orf33
chromosome 10 open reading frame 33
Alias_symbol (synonym)FLJ23849
Other aliasFP3420
HGNC (Hugo) PYROXD2
LocusID (NCBI) 84795
Atlas_Id 72433
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 98383565 and ends at 98415221 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PYROXD2   23517
Cards
Entrez_Gene (NCBI)PYROXD2  84795  pyridine nucleotide-disulphide oxidoreductase domain 2
AliasesC10orf33; FP3420
GeneCards (Weizmann)PYROXD2
Ensembl hg19 (Hinxton)ENSG00000119943 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119943 [Gene_View]  chr10:98383565-98415221 [Contig_View]  PYROXD2 [Vega]
ICGC DataPortalENSG00000119943
TCGA cBioPortalPYROXD2
AceView (NCBI)PYROXD2
Genatlas (Paris)PYROXD2
WikiGenes84795
SOURCE (Princeton)PYROXD2
Genetics Home Reference (NIH)PYROXD2
Genomic and cartography
GoldenPath hg38 (UCSC)PYROXD2  -     chr10:98383565-98415221 -  10q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PYROXD2  -     10q24.2   [Description]    (hg19-Feb_2009)
EnsemblPYROXD2 - 10q24.2 [CytoView hg19]  PYROXD2 - 10q24.2 [CytoView hg38]
Mapping of homologs : NCBIPYROXD2 [Mapview hg19]  PYROXD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF461898 AK022259 AK074429 AK075265 AK123713
RefSeq transcript (Entrez)NM_032709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PYROXD2
Cluster EST : UnigeneHs.238303 [ NCBI ]
CGAP (NCI)Hs.238303
Alternative Splicing GalleryENSG00000119943
Gene ExpressionPYROXD2 [ NCBI-GEO ]   PYROXD2 [ EBI - ARRAY_EXPRESS ]   PYROXD2 [ SEEK ]   PYROXD2 [ MEM ]
Gene Expression Viewer (FireBrowse)PYROXD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84795
GTEX Portal (Tissue expression)PYROXD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2H3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2H3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2H3
Splice isoforms : SwissVarQ8N2H3
PhosPhoSitePlusQ8N2H3
Domains : Interpro (EBI)Amino_oxidase    FAD/NAD-binding_dom   
Domain families : Pfam (Sanger)Amino_oxidase (PF01593)   
Domain families : Pfam (NCBI)pfam01593   
Conserved Domain (NCBI)PYROXD2
DMDM Disease mutations84795
Blocks (Seattle)PYROXD2
SuperfamilyQ8N2H3
Human Protein AtlasENSG00000119943
Peptide AtlasQ8N2H3
HPRD12572
IPIIPI00296156   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2H3
IntAct (EBI)Q8N2H3
FunCoupENSG00000119943
BioGRIDPYROXD2
STRING (EMBL)PYROXD2
ZODIACPYROXD2
Ontologies - Pathways
QuickGOQ8N2H3
Ontology : AmiGOprotein binding  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBIprotein binding  oxidoreductase activity  oxidation-reduction process  
NDEx NetworkPYROXD2
Atlas of Cancer Signalling NetworkPYROXD2
Wikipedia pathwaysPYROXD2
Orthology - Evolution
OrthoDB84795
GeneTree (enSembl)ENSG00000119943
Phylogenetic Trees/Animal Genes : TreeFamPYROXD2
HOVERGENQ8N2H3
HOGENOMQ8N2H3
Homologs : HomoloGenePYROXD2
Homology/Alignments : Family Browser (UCSC)PYROXD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPYROXD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PYROXD2
dbVarPYROXD2
ClinVarPYROXD2
1000_GenomesPYROXD2 
Exome Variant ServerPYROXD2
ExAC (Exome Aggregation Consortium)PYROXD2 (select the gene name)
Genetic variants : HAPMAP84795
Genomic Variants (DGV)PYROXD2 [DGVbeta]
DECIPHERPYROXD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPYROXD2 
Mutations
ICGC Data PortalPYROXD2 
TCGA Data PortalPYROXD2 
Broad Tumor PortalPYROXD2
OASIS PortalPYROXD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPYROXD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPYROXD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PYROXD2
DgiDB (Drug Gene Interaction Database)PYROXD2
DoCM (Curated mutations)PYROXD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PYROXD2 (select a term)
intoGenPYROXD2
Cancer3DPYROXD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPYROXD2
Genetic Testing Registry PYROXD2
NextProtQ8N2H3 [Medical]
TSGene84795
GENETestsPYROXD2
Target ValidationPYROXD2
Huge Navigator PYROXD2 [HugePedia]
snp3D : Map Gene to Disease84795
BioCentury BCIQPYROXD2
ClinGenPYROXD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84795
Chemical/Pharm GKB GenePA165549043
Clinical trialPYROXD2
Miscellaneous
canSAR (ICR)PYROXD2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePYROXD2
EVEXPYROXD2
GoPubMedPYROXD2
iHOPPYROXD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:01 CEST 2017

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