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PYURF (PIGY upstream reading frame)

Identity

Alias_symbol (synonym)PreY
Other aliasPREY
HGNC (Hugo) PYURF
LocusID (NCBI) 100996939
Atlas_Id 72434
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 89442129 and ends at 89444952 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PYURF   44317
Cards
Entrez_Gene (NCBI)PYURF  100996939  PIGY upstream reading frame
AliasesPREY
GeneCards (Weizmann)PYURF
Ensembl hg19 (Hinxton)ENSG00000145337 [Gene_View]  chr4:89442129-89444952 [Contig_View]  PYURF [Vega]
Ensembl hg38 (Hinxton)ENSG00000145337 [Gene_View]  chr4:89442129-89444952 [Contig_View]  PYURF [Vega]
ICGC DataPortalENSG00000145337
TCGA cBioPortalPYURF
AceView (NCBI)PYURF
Genatlas (Paris)PYURF
WikiGenes100996939
SOURCE (Princeton)PYURF
Genetics Home Reference (NIH)PYURF
Genomic and cartography
GoldenPath hg19 (UCSC)PYURF  -     chr4:89442129-89444952 -  4q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PYURF  -     4q22.1   [Description]    (hg38-Dec_2013)
EnsemblPYURF - 4q22.1 [CytoView hg19]  PYURF - 4q22.1 [CytoView hg38]
Mapping of homologs : NCBIPYURF [Mapview hg19]  PYURF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK312082 BG706896 CB305903 CV812938
RefSeq transcript (Entrez)NM_032906
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)PYURF
Cluster EST : UnigeneHs.743393 [ NCBI ]
CGAP (NCI)Hs.743393
Alternative Splicing GalleryENSG00000145337
Gene ExpressionPYURF [ NCBI-GEO ]   PYURF [ EBI - ARRAY_EXPRESS ]   PYURF [ SEEK ]   PYURF [ MEM ]
Gene Expression Viewer (FireBrowse)PYURF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100996939
GTEX Portal (Tissue expression)PYURF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96I23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96I23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96I23
Splice isoforms : SwissVarQ96I23
PhosPhoSitePlusQ96I23
Domains : Interpro (EBI)UPF0434/Trm112   
Domain families : Pfam (Sanger)Trm112p (PF03966)   
Domain families : Pfam (NCBI)pfam03966   
Conserved Domain (NCBI)PYURF
DMDM Disease mutations100996939
Blocks (Seattle)PYURF
SuperfamilyQ96I23
Human Protein AtlasENSG00000145337
Peptide AtlasQ96I23
Protein Interaction databases
DIP (DOE-UCLA)Q96I23
IntAct (EBI)Q96I23
FunCoupENSG00000145337
BioGRIDPYURF
STRING (EMBL)PYURF
ZODIACPYURF
Ontologies - Pathways
QuickGOQ96I23
Ontology : AmiGOglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex  protein binding  mitochondrion  endoplasmic reticulum membrane  GPI anchor biosynthetic process  positive regulation of metabolic process  
Ontology : EGO-EBIglycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex  protein binding  mitochondrion  endoplasmic reticulum membrane  GPI anchor biosynthetic process  positive regulation of metabolic process  
NDEx NetworkPYURF
Atlas of Cancer Signalling NetworkPYURF
Wikipedia pathwaysPYURF
Orthology - Evolution
OrthoDB100996939
GeneTree (enSembl)ENSG00000145337
Phylogenetic Trees/Animal Genes : TreeFamPYURF
HOVERGENQ96I23
HOGENOMQ96I23
Homologs : HomoloGenePYURF
Homology/Alignments : Family Browser (UCSC)PYURF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPYURF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PYURF
dbVarPYURF
ClinVarPYURF
1000_GenomesPYURF 
Exome Variant ServerPYURF
ExAC (Exome Aggregation Consortium)PYURF (select the gene name)
Genetic variants : HAPMAP100996939
Genomic Variants (DGV)PYURF [DGVbeta]
DECIPHER (Syndromes)4:89442129-89444952  ENSG00000145337
CONAN: Copy Number AnalysisPYURF 
Mutations
ICGC Data PortalPYURF 
TCGA Data PortalPYURF 
Broad Tumor PortalPYURF
OASIS PortalPYURF [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPYURF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch PYURF
DgiDB (Drug Gene Interaction Database)PYURF
DoCM (Curated mutations)PYURF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PYURF (select a term)
intoGenPYURF
Cancer3DPYURF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPYURF
Genetic Testing Registry PYURF
NextProtQ96I23 [Medical]
TSGene100996939
GENETestsPYURF
Huge Navigator PYURF [HugePedia]
snp3D : Map Gene to Disease100996939
BioCentury BCIQPYURF
ClinGenPYURF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100996939
Clinical trialPYURF
Miscellaneous
canSAR (ICR)PYURF (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePYURF
EVEXPYURF
GoPubMedPYURF
iHOPPYURF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:22 CET 2017

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