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QRICH1 (glutamine rich 1)

Identity

Alias_namesglutamine-rich 1
Alias_symbol (synonym)FLJ20259
Other alias-
HGNC (Hugo) QRICH1
LocusID (NCBI) 54870
Atlas_Id 54566
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49029707 and ends at 49093632 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABTB2 (11p13) / QRICH1 (3p21.31)QRICH1 (3p21.31) / SHISA5 (3p21.31)QRICH1 (3p21.31) / SRSF11 (1p31.1)
SETD2 (3p21.31) / QRICH1 (3p21.31)SP1 (12q13.13) / QRICH1 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)QRICH1   24713
Cards
Entrez_Gene (NCBI)QRICH1  54870  glutamine rich 1
Aliases
GeneCards (Weizmann)QRICH1
Ensembl hg19 (Hinxton)ENSG00000198218 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198218 [Gene_View]  chr3:49029707-49093632 [Contig_View]  QRICH1 [Vega]
ICGC DataPortalENSG00000198218
TCGA cBioPortalQRICH1
AceView (NCBI)QRICH1
Genatlas (Paris)QRICH1
WikiGenes54870
SOURCE (Princeton)QRICH1
Genetics Home Reference (NIH)QRICH1
Genomic and cartography
GoldenPath hg38 (UCSC)QRICH1  -     chr3:49029707-49093632 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)QRICH1  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblQRICH1 - 3p21.31 [CytoView hg19]  QRICH1 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIQRICH1 [Mapview hg19]  QRICH1 [Mapview hg38]
OMIM617387   
Gene and transcription
Genbank (Entrez)AK000266 AK022524 AK025013 AK074313 AK093259
RefSeq transcript (Entrez)NM_001320580 NM_001320581 NM_001320582 NM_001320583 NM_001320584 NM_001320585 NM_017730 NM_198880
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)QRICH1
Cluster EST : UnigeneHs.297389 [ NCBI ]
CGAP (NCI)Hs.297389
Alternative Splicing GalleryENSG00000198218
Gene ExpressionQRICH1 [ NCBI-GEO ]   QRICH1 [ EBI - ARRAY_EXPRESS ]   QRICH1 [ SEEK ]   QRICH1 [ MEM ]
Gene Expression Viewer (FireBrowse)QRICH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54870
GTEX Portal (Tissue expression)QRICH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TAL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TAL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TAL8
Splice isoforms : SwissVarQ2TAL8
PhosPhoSitePlusQ2TAL8
Domains : Interpro (EBI)DEATH-like_dom    DUF3504   
Domain families : Pfam (Sanger)DUF3504 (PF12012)   
Domain families : Pfam (NCBI)pfam12012   
Conserved Domain (NCBI)QRICH1
DMDM Disease mutations54870
Blocks (Seattle)QRICH1
SuperfamilyQ2TAL8
Human Protein AtlasENSG00000198218
Peptide AtlasQ2TAL8
HPRD13372
IPIIPI00328200   IPI00927294   IPI00927065   
Protein Interaction databases
DIP (DOE-UCLA)Q2TAL8
IntAct (EBI)Q2TAL8
FunCoupENSG00000198218
BioGRIDQRICH1
STRING (EMBL)QRICH1
ZODIACQRICH1
Ontologies - Pathways
QuickGOQ2TAL8
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  molecular_function  DNA binding  protein binding  cellular_component  nucleoplasm  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  cytoskeleton organization  multicellular organism development  biological_process  regulation of cell morphogenesis  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  molecular_function  DNA binding  protein binding  cellular_component  nucleoplasm  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  cytoskeleton organization  multicellular organism development  biological_process  regulation of cell morphogenesis  
NDEx NetworkQRICH1
Atlas of Cancer Signalling NetworkQRICH1
Wikipedia pathwaysQRICH1
Orthology - Evolution
OrthoDB54870
GeneTree (enSembl)ENSG00000198218
Phylogenetic Trees/Animal Genes : TreeFamQRICH1
HOVERGENQ2TAL8
HOGENOMQ2TAL8
Homologs : HomoloGeneQRICH1
Homology/Alignments : Family Browser (UCSC)QRICH1
Gene fusions - Rearrangements
Fusion : MitelmanQRICH1/SHISA5 [3p21.31/3p21.31]  
Fusion : MitelmanSETD2/QRICH1 [3p21.31/3p21.31]  [t(3;3)(p21;p21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerQRICH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)QRICH1
dbVarQRICH1
ClinVarQRICH1
1000_GenomesQRICH1 
Exome Variant ServerQRICH1
ExAC (Exome Aggregation Consortium)QRICH1 (select the gene name)
Genetic variants : HAPMAP54870
Genomic Variants (DGV)QRICH1 [DGVbeta]
DECIPHERQRICH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisQRICH1 
Mutations
ICGC Data PortalQRICH1 
TCGA Data PortalQRICH1 
Broad Tumor PortalQRICH1
OASIS PortalQRICH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICQRICH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDQRICH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch QRICH1
DgiDB (Drug Gene Interaction Database)QRICH1
DoCM (Curated mutations)QRICH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)QRICH1 (select a term)
intoGenQRICH1
Cancer3DQRICH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617387   
Orphanet
MedgenQRICH1
Genetic Testing Registry QRICH1
NextProtQ2TAL8 [Medical]
TSGene54870
GENETestsQRICH1
Target ValidationQRICH1
Huge Navigator QRICH1 [HugePedia]
snp3D : Map Gene to Disease54870
BioCentury BCIQQRICH1
ClinGenQRICH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54870
Chemical/Pharm GKB GenePA142671106
Clinical trialQRICH1
Miscellaneous
canSAR (ICR)QRICH1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineQRICH1
EVEXQRICH1
GoPubMedQRICH1
iHOPQRICH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:04:57 CEST 2017

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