Atlas of Genetics and Cytogenetics in Oncology and Haematology


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QRSL1 (glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1)

Identity

Alias_namessubunit A
Alias_symbol (synonym)GatA
FLJ10989
FLJ12189
DKFZP564C1278
FLJ13447
Other alias
HGNC (Hugo) QRSL1
LocusID (NCBI) 55278
Atlas_Id 41954
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 106629566 and ends at 106668417 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATG5 (6q21) / QRSL1 (6q21)PNISR (6q16.2) / QRSL1 (6q21)QRSL1 (6q21) / QRSL1 (6q21)
ATG5 6q21 / QRSL1 6q21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)QRSL1   21020
Cards
Entrez_Gene (NCBI)QRSL1  55278  glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
AliasesGatA
GeneCards (Weizmann)QRSL1
Ensembl hg19 (Hinxton)ENSG00000130348 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130348 [Gene_View]  ENSG00000130348 [Sequence]  chr6:106629566-106668417 [Contig_View]  QRSL1 [Vega]
ICGC DataPortalENSG00000130348
TCGA cBioPortalQRSL1
AceView (NCBI)QRSL1
Genatlas (Paris)QRSL1
WikiGenes55278
SOURCE (Princeton)QRSL1
Genetics Home Reference (NIH)QRSL1
Genomic and cartography
GoldenPath hg38 (UCSC)QRSL1  -     chr6:106629566-106668417 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)QRSL1  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblQRSL1 - 3p21.31 [CytoView hg19]  QRSL1 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIQRSL1 [Mapview hg19]  QRSL1 [Mapview hg38]
OMIM617209   
Gene and transcription
Genbank (Entrez)AK001851 AK022251 AK023509 AK225262 AK225443
RefSeq transcript (Entrez)NM_018292
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)QRSL1
Cluster EST : UnigeneHs.406917 [ NCBI ]
CGAP (NCI)Hs.406917
Alternative Splicing GalleryENSG00000130348
Gene ExpressionQRSL1 [ NCBI-GEO ]   QRSL1 [ EBI - ARRAY_EXPRESS ]   QRSL1 [ SEEK ]   QRSL1 [ MEM ]
Gene Expression Viewer (FireBrowse)QRSL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55278
GTEX Portal (Tissue expression)QRSL1
Human Protein AtlasENSG00000130348-QRSL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0R6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0R6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0R6
Splice isoforms : SwissVarQ9H0R6
PhosPhoSitePlusQ9H0R6
Domains : Interpro (EBI)Amidase    Amidase_dom    AS_sf    GatA   
Domain families : Pfam (Sanger)Amidase (PF01425)   
Domain families : Pfam (NCBI)pfam01425   
Conserved Domain (NCBI)QRSL1
DMDM Disease mutations55278
Blocks (Seattle)QRSL1
SuperfamilyQ9H0R6
Human Protein Atlas [tissue]ENSG00000130348-QRSL1 [tissue]
Peptide AtlasQ9H0R6
HPRD15199
IPIIPI00090720   IPI00386916   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0R6
IntAct (EBI)Q9H0R6
FunCoupENSG00000130348
BioGRIDQRSL1
STRING (EMBL)QRSL1
ZODIACQRSL1
Ontologies - Pathways
QuickGOQ9H0R6
Ontology : AmiGOamidase activity  protein binding  ATP binding  mitochondrion  glutamyl-tRNA(Gln) amidotransferase complex  regulation of protein stability  mitochondrial translation  glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity  glutaminyl-tRNAGln biosynthesis via transamidation  
Ontology : EGO-EBIamidase activity  protein binding  ATP binding  mitochondrion  glutamyl-tRNA(Gln) amidotransferase complex  regulation of protein stability  mitochondrial translation  glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity  glutaminyl-tRNAGln biosynthesis via transamidation  
Pathways : KEGGAminoacyl-tRNA biosynthesis   
NDEx NetworkQRSL1
Atlas of Cancer Signalling NetworkQRSL1
Wikipedia pathwaysQRSL1
Orthology - Evolution
OrthoDB55278
GeneTree (enSembl)ENSG00000130348
Phylogenetic Trees/Animal Genes : TreeFamQRSL1
HOVERGENQ9H0R6
HOGENOMQ9H0R6
Homologs : HomoloGeneQRSL1
Homology/Alignments : Family Browser (UCSC)QRSL1
Gene fusions - Rearrangements
Fusion PortalATG5 6q21 QRSL1 6q21 BRCA
Fusion : QuiverQRSL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerQRSL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)QRSL1
dbVarQRSL1
ClinVarQRSL1
1000_GenomesQRSL1 
Exome Variant ServerQRSL1
ExAC (Exome Aggregation Consortium)ENSG00000130348
GNOMAD BrowserENSG00000130348
Varsome BrowserQRSL1
Genetic variants : HAPMAP55278
Genomic Variants (DGV)QRSL1 [DGVbeta]
DECIPHERQRSL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisQRSL1 
Mutations
ICGC Data PortalQRSL1 
TCGA Data PortalQRSL1 
Broad Tumor PortalQRSL1
OASIS PortalQRSL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICQRSL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDQRSL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch QRSL1
DgiDB (Drug Gene Interaction Database)QRSL1
DoCM (Curated mutations)QRSL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)QRSL1 (select a term)
intoGenQRSL1
Cancer3DQRSL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617209   
Orphanet
DisGeNETQRSL1
MedgenQRSL1
Genetic Testing Registry QRSL1
NextProtQ9H0R6 [Medical]
TSGene55278
GENETestsQRSL1
Target ValidationQRSL1
Huge Navigator QRSL1 [HugePedia]
snp3D : Map Gene to Disease55278
BioCentury BCIQQRSL1
ClinGenQRSL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55278
Chemical/Pharm GKB GenePA128394680
Clinical trialQRSL1
Miscellaneous
canSAR (ICR)QRSL1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineQRSL1
EVEXQRSL1
GoPubMedQRSL1
iHOPQRSL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Aug 16 11:26:40 CEST 2018

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