Atlas of Genetics and Cytogenetics in Oncology and Haematology


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QSOX1 (quiescin Q6 sulfhydryl oxidase 1)

Identity

Other namesQ6
QSCN6
HGNC (Hugo) QSOX1
LocusID (NCBI) 5768
Location 1q25.2
Location_base_pair Starts at 180123968 and ends at 180167169 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)QSOX1   9756
Cards
Entrez_Gene (NCBI)QSOX1  5768  quiescin Q6 sulfhydryl oxidase 1
GeneCards (Weizmann)QSOX1
Ensembl (Hinxton)ENSG00000116260 [Gene_View]  chr1:180123968-180167169 [Contig_View]  QSOX1 [Vega]
ICGC DataPortalENSG00000116260
cBioPortalQSOX1
AceView (NCBI)QSOX1
Genatlas (Paris)QSOX1
WikiGenes5768
SOURCE (Princeton)NM_001004128 NM_002826
Genomic and cartography
GoldenPath (UCSC)QSOX1  -  1q25.2   chr1:180123968-180167169 +  1q25.2   [Description]    (hg19-Feb_2009)
EnsemblQSOX1 - 1q25.2 [CytoView]
Mapping of homologs : NCBIQSOX1 [Mapview]
OMIM603120   
Gene and transcription
Genbank (Entrez)AB209280 AF361868 AK092177 AK290842 AK290887
RefSeq transcript (Entrez)NM_001004128 NM_002826
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838533 NW_004929293
Consensus coding sequences : CCDS (NCBI)QSOX1
Cluster EST : UnigeneHs.744925 [ NCBI ]
CGAP (NCI)Hs.744925
Alternative Splicing : Fast-db (Paris)GSHG0001234
Alternative Splicing GalleryENSG00000116260
Gene ExpressionQSOX1 [ NCBI-GEO ]     QSOX1 [ SEEK ]   QSOX1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00391 (Uniprot)
NextProtO00391  [Medical]
With graphics : InterProO00391
Splice isoforms : SwissVarO00391 (Swissvar)
Catalytic activity : Enzyme1.8.3.2 [ Enzyme-Expasy ]   1.8.3.21.8.3.2 [ IntEnz-EBI ]   1.8.3.2 [ BRENDA ]   1.8.3.2 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ERV_ALR (PS51324)    THIOREDOXIN_2 (PS51352)   
Domains : Interpro (EBI)ERV/ALR_sulphydryl_oxidase [organisation]   Thioredoxin-like_fold [organisation]   Thioredoxin_domain [organisation]  
Related proteins : CluSTrO00391
Domain families : Pfam (Sanger)Evr1_Alr (PF04777)    Thioredoxin (PF00085)   
Domain families : Pfam (NCBI)pfam04777    pfam00085   
DMDM Disease mutations5768
Blocks (Seattle)O00391
PDB (SRS)3LLI    3LLK    3Q6O    4IJ3   
PDB (PDBSum)3LLI    3LLK    3Q6O    4IJ3   
PDB (IMB)3LLI    3LLK    3Q6O    4IJ3   
PDB (RSDB)3LLI    3LLK    3Q6O    4IJ3   
Human Protein AtlasENSG00000116260 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO00391
HPRD06785
IPIIPI00003590   IPI00465016   IPI00015916   IPI00152367   IPI00645742   IPI00872013   
Protein Interaction databases
DIP (DOE-UCLA)O00391
IntAct (EBI)O00391
FunCoupENSG00000116260
BioGRIDQSOX1
InParanoidO00391
Interologous Interaction database O00391
IntegromeDBQSOX1
STRING (EMBL)QSOX1
Ontologies - Pathways
Ontology : AmiGOprotein disulfide isomerase activity  protein disulfide isomerase activity  extracellular space  protein folding  protein folding  flavin-linked sulfhydryl oxidase activity  flavin-linked sulfhydryl oxidase activity  integral component of Golgi membrane  cell redox homeostasis  oxidation-reduction process  extracellular vesicular exosome  
Ontology : EGO-EBIprotein disulfide isomerase activity  protein disulfide isomerase activity  extracellular space  protein folding  protein folding  flavin-linked sulfhydryl oxidase activity  flavin-linked sulfhydryl oxidase activity  integral component of Golgi membrane  cell redox homeostasis  oxidation-reduction process  extracellular vesicular exosome  
Protein Interaction DatabaseQSOX1
Wikipedia pathwaysQSOX1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)QSOX1
snp3D : Map Gene to Disease5768
SNP (GeneSNP Utah)QSOX1
SNP : HGBaseQSOX1
Genetic variants : HAPMAPQSOX1
Exome VariantQSOX1
1000_GenomesQSOX1 
ICGC programENSG00000116260 
Somatic Mutations in Cancer : COSMICQSOX1 
CONAN: Copy Number AnalysisQSOX1 
Mutations and Diseases : HGMDQSOX1
Mutations and Diseases : intOGenQSOX1
Genomic VariantsQSOX1  QSOX1 [DGVbeta]
dbVarQSOX1
ClinVarQSOX1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM603120   
MedgenQSOX1
GENETestsQSOX1
Disease Genetic AssociationQSOX1
Huge Navigator QSOX1 [HugePedia]  QSOX1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneQSOX1
Homology/Alignments : Family Browser (UCSC)QSOX1
Phylogenetic Trees/Animal Genes : TreeFamQSOX1
Chemical/Protein Interactions : CTD5768
Chemical/Pharm GKB GenePA162400559
Clinical trialQSOX1
Cancer Resource (Charite)ENSG00000116260
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
CoreMineQSOX1
iHOPQSOX1
OncoSearchQSOX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:13:37 CEST 2014

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