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QTRT1 (queuine tRNA-ribosyltransferase catalytic subunit 1)

Identity

Alias_namesqueuine tRNA-ribosyltransferase 1
Alias_symbol (synonym)TGT
Other aliasFP3235
TGUT
HGNC (Hugo) QTRT1
LocusID (NCBI) 81890
Atlas_Id 72445
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10701436 and ends at 10713367 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCUN1D1 (3q26.33) / QTRT1 (19p13.2)QTRT1 (19p13.2) / IRF2BP2 (1q42.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)QTRT1   23797
Cards
Entrez_Gene (NCBI)QTRT1  81890  queuine tRNA-ribosyltransferase catalytic subunit 1
AliasesFP3235; TGT; TGUT
GeneCards (Weizmann)QTRT1
Ensembl hg19 (Hinxton)ENSG00000213339 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213339 [Gene_View]  chr19:10701436-10713367 [Contig_View]  QTRT1 [Vega]
ICGC DataPortalENSG00000213339
TCGA cBioPortalQTRT1
AceView (NCBI)QTRT1
Genatlas (Paris)QTRT1
WikiGenes81890
SOURCE (Princeton)QTRT1
Genetics Home Reference (NIH)QTRT1
Genomic and cartography
GoldenPath hg38 (UCSC)QTRT1  -     chr19:10701436-10713367 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)QTRT1  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblQTRT1 - 19p13.2 [CytoView hg19]  QTRT1 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIQTRT1 [Mapview hg19]  QTRT1 [Mapview hg38]
OMIM609615   
Gene and transcription
Genbank (Entrez)AF302783 AF302784 AF302785 AF370379 AK055216
RefSeq transcript (Entrez)NM_031209
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)QTRT1
Cluster EST : UnigeneHs.631638 [ NCBI ]
CGAP (NCI)Hs.631638
Alternative Splicing GalleryENSG00000213339
Gene ExpressionQTRT1 [ NCBI-GEO ]   QTRT1 [ EBI - ARRAY_EXPRESS ]   QTRT1 [ SEEK ]   QTRT1 [ MEM ]
Gene Expression Viewer (FireBrowse)QTRT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81890
GTEX Portal (Tissue expression)QTRT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXR0
Splice isoforms : SwissVarQ9BXR0
PhosPhoSitePlusQ9BXR0
Domains : Interpro (EBI)TGT    tRNA_ribo_trans-like   
Domain families : Pfam (Sanger)TGT (PF01702)   
Domain families : Pfam (NCBI)pfam01702   
Conserved Domain (NCBI)QTRT1
DMDM Disease mutations81890
Blocks (Seattle)QTRT1
SuperfamilyQ9BXR0
Human Protein AtlasENSG00000213339
Peptide AtlasQ9BXR0
HPRD17943
IPIIPI00215974   IPI00909359   IPI00435964   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXR0
IntAct (EBI)Q9BXR0
FunCoupENSG00000213339
BioGRIDQTRT1
STRING (EMBL)QTRT1
ZODIACQTRT1
Ontologies - Pathways
QuickGOQ9BXR0
Ontology : AmiGOnucleus  mitochondrial outer membrane  tRNA modification  queuine tRNA-ribosyltransferase activity  queuine tRNA-ribosyltransferase activity  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  queuosine biosynthetic process  protein homodimerization activity  metal ion binding  protein heterodimerization activity  tRNA-guanine transglycosylation  
Ontology : EGO-EBInucleus  mitochondrial outer membrane  tRNA modification  queuine tRNA-ribosyltransferase activity  queuine tRNA-ribosyltransferase activity  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  queuosine biosynthetic process  protein homodimerization activity  metal ion binding  protein heterodimerization activity  tRNA-guanine transglycosylation  
NDEx NetworkQTRT1
Atlas of Cancer Signalling NetworkQTRT1
Wikipedia pathwaysQTRT1
Orthology - Evolution
OrthoDB81890
GeneTree (enSembl)ENSG00000213339
Phylogenetic Trees/Animal Genes : TreeFamQTRT1
HOVERGENQ9BXR0
HOGENOMQ9BXR0
Homologs : HomoloGeneQTRT1
Homology/Alignments : Family Browser (UCSC)QTRT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerQTRT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)QTRT1
dbVarQTRT1
ClinVarQTRT1
1000_GenomesQTRT1 
Exome Variant ServerQTRT1
ExAC (Exome Aggregation Consortium)QTRT1 (select the gene name)
Genetic variants : HAPMAP81890
Genomic Variants (DGV)QTRT1 [DGVbeta]
DECIPHERQTRT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisQTRT1 
Mutations
ICGC Data PortalQTRT1 
TCGA Data PortalQTRT1 
Broad Tumor PortalQTRT1
OASIS PortalQTRT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICQTRT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDQTRT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch QTRT1
DgiDB (Drug Gene Interaction Database)QTRT1
DoCM (Curated mutations)QTRT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)QTRT1 (select a term)
intoGenQTRT1
Cancer3DQTRT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609615   
Orphanet
MedgenQTRT1
Genetic Testing Registry QTRT1
NextProtQ9BXR0 [Medical]
TSGene81890
GENETestsQTRT1
Target ValidationQTRT1
Huge Navigator QTRT1 [HugePedia]
snp3D : Map Gene to Disease81890
BioCentury BCIQQTRT1
ClinGenQTRT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81890
Chemical/Pharm GKB GenePA134963074
Clinical trialQTRT1
Miscellaneous
canSAR (ICR)QTRT1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineQTRT1
EVEXQTRT1
GoPubMedQTRT1
iHOPQTRT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:46 CEST 2017

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