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QTRT1 (queuine tRNA-ribosyltransferase catalytic subunit 1)

Identity

Alias (NCBI)FP3235
TGT
TGUT
HGNC (Hugo) QTRT1
HGNC Alias symbTGT
HGNC Alias nametRNA-guanine transglycosylase
HGNC Previous namequeuine tRNA-ribosyltransferase 1
LocusID (NCBI) 81890
Atlas_Id 72445
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10701439 and ends at 10713365 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DCUN1D1 (3q26.33) / QTRT1 (19p13.2)QTRT1 (19p13.2) / IRF2BP2 (1q42.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)QTRT1   23797
Cards
Entrez_Gene (NCBI)QTRT1    queuine tRNA-ribosyltransferase catalytic subunit 1
AliasesFP3235; TGT; TGUT
GeneCards (Weizmann)QTRT1
Ensembl hg19 (Hinxton)ENSG00000213339 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213339 [Gene_View]  ENSG00000213339 [Sequence]  chr19:10701439-10713365 [Contig_View]  QTRT1 [Vega]
ICGC DataPortalENSG00000213339
TCGA cBioPortalQTRT1
AceView (NCBI)QTRT1
Genatlas (Paris)QTRT1
SOURCE (Princeton)QTRT1
Genetics Home Reference (NIH)QTRT1
Genomic and cartography
GoldenPath hg38 (UCSC)QTRT1  -     chr19:10701439-10713365 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)QTRT1  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathQTRT1 - 19p13.2 [CytoView hg19]  QTRT1 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000213339
Genome Data Viewer NCBIQTRT1 [Mapview hg19]  
OMIM609615   
Gene and transcription
Genbank (Entrez)AF302783 AF302784 AF302785 AF370379 AK055216
RefSeq transcript (Entrez)NM_031209
Consensus coding sequences : CCDS (NCBI)QTRT1
Gene ExpressionQTRT1 [ NCBI-GEO ]   QTRT1 [ EBI - ARRAY_EXPRESS ]   QTRT1 [ SEEK ]   QTRT1 [ MEM ]
Gene Expression Viewer (FireBrowse)QTRT1 [ Firebrowse - Broad ]
GenevisibleExpression of QTRT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81890
GTEX Portal (Tissue expression)QTRT1
Human Protein AtlasENSG00000213339-QTRT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXR0
PhosPhoSitePlusQ9BXR0
Domains : Interpro (EBI)TGT    TGT-like_sf    tRNA_ribo_trans-like   
Domain families : Pfam (Sanger)TGT (PF01702)   
Domain families : Pfam (NCBI)pfam01702   
Conserved Domain (NCBI)QTRT1
PDB (RSDB)6H42    6H45   
PDB Europe6H42    6H45   
PDB (PDBSum)6H42    6H45   
PDB (IMB)6H42    6H45   
Structural Biology KnowledgeBase6H42    6H45   
SCOP (Structural Classification of Proteins)6H42    6H45   
CATH (Classification of proteins structures)6H42    6H45   
SuperfamilyQ9BXR0
AlphaFold pdb e-kbQ9BXR0   
Human Protein Atlas [tissue]ENSG00000213339-QTRT1 [tissue]
HPRD17943
Protein Interaction databases
DIP (DOE-UCLA)Q9BXR0
IntAct (EBI)Q9BXR0
BioGRIDQTRT1
STRING (EMBL)QTRT1
ZODIACQTRT1
Ontologies - Pathways
QuickGOQ9BXR0
Ontology : AmiGOnucleus  mitochondrial outer membrane  tRNA modification  tRNA modification  queuine tRNA-ribosyltransferase activity  queuine tRNA-ribosyltransferase activity  protein-containing complex  protein homodimerization activity  metal ion binding  protein heterodimerization activity  tRNA-guanine transglycosylation  tRNA-guanine transglycosylation  
Ontology : EGO-EBInucleus  mitochondrial outer membrane  tRNA modification  tRNA modification  queuine tRNA-ribosyltransferase activity  queuine tRNA-ribosyltransferase activity  protein-containing complex  protein homodimerization activity  metal ion binding  protein heterodimerization activity  tRNA-guanine transglycosylation  tRNA-guanine transglycosylation  
NDEx NetworkQTRT1
Atlas of Cancer Signalling NetworkQTRT1
Wikipedia pathwaysQTRT1
Orthology - Evolution
OrthoDB81890
GeneTree (enSembl)ENSG00000213339
Phylogenetic Trees/Animal Genes : TreeFamQTRT1
Homologs : HomoloGeneQTRT1
Homology/Alignments : Family Browser (UCSC)QTRT1
Gene fusions - Rearrangements
Fusion : QuiverQTRT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerQTRT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)QTRT1
dbVarQTRT1
ClinVarQTRT1
MonarchQTRT1
1000_GenomesQTRT1 
Exome Variant ServerQTRT1
GNOMAD BrowserENSG00000213339
Varsome BrowserQTRT1
ACMGQTRT1 variants
VarityQ9BXR0
Genomic Variants (DGV)QTRT1 [DGVbeta]
DECIPHERQTRT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisQTRT1 
Mutations
ICGC Data PortalQTRT1 
TCGA Data PortalQTRT1 
Broad Tumor PortalQTRT1
OASIS PortalQTRT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICQTRT1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DQTRT1
Mutations and Diseases : HGMDQTRT1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaQTRT1
DgiDB (Drug Gene Interaction Database)QTRT1
DoCM (Curated mutations)QTRT1
CIViC (Clinical Interpretations of Variants in Cancer)QTRT1
Cancer3DQTRT1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609615   
Orphanet
DisGeNETQTRT1
MedgenQTRT1
Genetic Testing Registry QTRT1
NextProtQ9BXR0 [Medical]
GENETestsQTRT1
Target ValidationQTRT1
Huge Navigator QTRT1 [HugePedia]
ClinGenQTRT1
Clinical trials, drugs, therapy
MyCancerGenomeQTRT1
Protein Interactions : CTDQTRT1
Pharm GKB GenePA134963074
PharosQ9BXR0
Clinical trialQTRT1
Miscellaneous
canSAR (ICR)QTRT1
HarmonizomeQTRT1
DataMed IndexQTRT1
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXQTRT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:17:48 CEST 2021

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