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QTRT2 (queuine tRNA-ribosyltransferase accessory subunit 2)

Identity

Alias_namesQTRTD1
queuine tRNA-ribosyltransferase domain containing 1
Alias_symbol (synonym)FLJ12960
Other alias
HGNC (Hugo) QTRT2
LocusID (NCBI) 79691
Atlas_Id 78322
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 114056735 and ends at 114088421 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)QTRT2   25771
Cards
Entrez_Gene (NCBI)QTRT2  79691  queuine tRNA-ribosyltransferase accessory subunit 2
AliasesQTRTD1
GeneCards (Weizmann)QTRT2
Ensembl hg19 (Hinxton)ENSG00000151576 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151576 [Gene_View]  chr3:114056735-114088421 [Contig_View]  QTRT2 [Vega]
ICGC DataPortalENSG00000151576
TCGA cBioPortalQTRT2
AceView (NCBI)QTRT2
Genatlas (Paris)QTRT2
WikiGenes79691
SOURCE (Princeton)QTRT2
Genetics Home Reference (NIH)QTRT2
Genomic and cartography
GoldenPath hg38 (UCSC)QTRT2  -     chr3:114056735-114088421 +  3q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)QTRT2  -     3q13.31   [Description]    (hg19-Feb_2009)
EnsemblQTRT2 - 3q13.31 [CytoView hg19]  QTRT2 - 3q13.31 [CytoView hg38]
Mapping of homologs : NCBIQTRT2 [Mapview hg19]  QTRT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023022 AK296938 AK299313 AL832215 AL833709
RefSeq transcript (Entrez)NM_001256835 NM_001256836 NM_001256837 NM_024638
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)QTRT2
Cluster EST : UnigeneHs.477162 [ NCBI ]
CGAP (NCI)Hs.477162
Alternative Splicing GalleryENSG00000151576
Gene ExpressionQTRT2 [ NCBI-GEO ]   QTRT2 [ EBI - ARRAY_EXPRESS ]   QTRT2 [ SEEK ]   QTRT2 [ MEM ]
Gene Expression Viewer (FireBrowse)QTRT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79691
GTEX Portal (Tissue expression)QTRT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H974   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H974  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H974
Splice isoforms : SwissVarQ9H974
PhosPhoSitePlusQ9H974
Domains : Interpro (EBI)QTRTD1    tRNA_ribo_trans-like   
Domain families : Pfam (Sanger)TGT (PF01702)   
Domain families : Pfam (NCBI)pfam01702   
Conserved Domain (NCBI)QTRT2
DMDM Disease mutations79691
Blocks (Seattle)QTRT2
SuperfamilyQ9H974
Human Protein AtlasENSG00000151576
Peptide AtlasQ9H974
HPRD17944
IPIIPI00783033   IPI00074010   IPI00794622   IPI00945792   IPI00979893   IPI00945944   IPI00944953   
Protein Interaction databases
DIP (DOE-UCLA)Q9H974
IntAct (EBI)Q9H974
FunCoupENSG00000151576
BioGRIDQTRT2
STRING (EMBL)QTRT2
ZODIACQTRT2
Ontologies - Pathways
QuickGOQ9H974
Ontology : AmiGOcytoplasm  cytoplasm  mitochondrion  mitochondrial outer membrane  tRNA modification  queuine tRNA-ribosyltransferase activity  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  queuosine biosynthetic process  protein homodimerization activity  metal ion binding  protein heterodimerization activity  
Ontology : EGO-EBIcytoplasm  cytoplasm  mitochondrion  mitochondrial outer membrane  tRNA modification  queuine tRNA-ribosyltransferase activity  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  queuosine biosynthetic process  protein homodimerization activity  metal ion binding  protein heterodimerization activity  
NDEx NetworkQTRT2
Atlas of Cancer Signalling NetworkQTRT2
Wikipedia pathwaysQTRT2
Orthology - Evolution
OrthoDB79691
GeneTree (enSembl)ENSG00000151576
Phylogenetic Trees/Animal Genes : TreeFamQTRT2
HOVERGENQ9H974
HOGENOMQ9H974
Homologs : HomoloGeneQTRT2
Homology/Alignments : Family Browser (UCSC)QTRT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerQTRT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)QTRT2
dbVarQTRT2
ClinVarQTRT2
1000_GenomesQTRT2 
Exome Variant ServerQTRT2
ExAC (Exome Aggregation Consortium)QTRT2 (select the gene name)
Genetic variants : HAPMAP79691
Genomic Variants (DGV)QTRT2 [DGVbeta]
DECIPHERQTRT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisQTRT2 
Mutations
ICGC Data PortalQTRT2 
TCGA Data PortalQTRT2 
Broad Tumor PortalQTRT2
OASIS PortalQTRT2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDQTRT2
BioMutasearch QTRT2
DgiDB (Drug Gene Interaction Database)QTRT2
DoCM (Curated mutations)QTRT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)QTRT2 (select a term)
intoGenQTRT2
Cancer3DQTRT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenQTRT2
Genetic Testing Registry QTRT2
NextProtQ9H974 [Medical]
TSGene79691
GENETestsQTRT2
Target ValidationQTRT2
Huge Navigator QTRT2 [HugePedia]
snp3D : Map Gene to Disease79691
BioCentury BCIQQTRT2
ClinGenQTRT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79691
Chemical/Pharm GKB GenePA134925851
Clinical trialQTRT2
Miscellaneous
canSAR (ICR)QTRT2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineQTRT2
EVEXQTRT2
GoPubMedQTRT2
iHOPQTRT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:46 CEST 2017

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