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QTRTD1 (queuine tRNA-ribosyltransferase domain containing 1)

Identity

Other alias-
HGNC (Hugo) QTRTD1
LocusID (NCBI) 79691
Atlas_Id 72446
Location 3q13.31  [Link to chromosome band 3q13]
Location_base_pair Starts at 113775582 and ends at 113807268 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)QTRTD1   25771
Cards
Entrez_Gene (NCBI)QTRTD1  79691  queuine tRNA-ribosyltransferase domain containing 1
Aliases
GeneCards (Weizmann)QTRTD1
Ensembl hg19 (Hinxton)ENSG00000151576 [Gene_View]  chr3:113775582-113807268 [Contig_View]  QTRTD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000151576 [Gene_View]  chr3:113775582-113807268 [Contig_View]  QTRTD1 [Vega]
ICGC DataPortalENSG00000151576
TCGA cBioPortalQTRTD1
AceView (NCBI)QTRTD1
Genatlas (Paris)QTRTD1
WikiGenes79691
SOURCE (Princeton)QTRTD1
Genetics Home Reference (NIH)QTRTD1
Genomic and cartography
GoldenPath hg19 (UCSC)QTRTD1  -     chr3:113775582-113807268 +  3q13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)QTRTD1  -     3q13.31   [Description]    (hg38-Dec_2013)
EnsemblQTRTD1 - 3q13.31 [CytoView hg19]  QTRTD1 - 3q13.31 [CytoView hg38]
Mapping of homologs : NCBIQTRTD1 [Mapview hg19]  QTRTD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023022 AK296938 AK299313 AL832215 AL833709
RefSeq transcript (Entrez)NM_001256835 NM_001256836 NM_001256837 NM_024638
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)QTRTD1
Cluster EST : UnigeneHs.477162 [ NCBI ]
CGAP (NCI)Hs.477162
Alternative Splicing GalleryENSG00000151576
Gene ExpressionQTRTD1 [ NCBI-GEO ]   QTRTD1 [ EBI - ARRAY_EXPRESS ]   QTRTD1 [ SEEK ]   QTRTD1 [ MEM ]
Gene Expression Viewer (FireBrowse)QTRTD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79691
GTEX Portal (Tissue expression)QTRTD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H974   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H974  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H974
Splice isoforms : SwissVarQ9H974
PhosPhoSitePlusQ9H974
Domains : Interpro (EBI)QTRTD1    tRNA_ribo_trans-like   
Domain families : Pfam (Sanger)TGT (PF01702)   
Domain families : Pfam (NCBI)pfam01702   
Conserved Domain (NCBI)QTRTD1
DMDM Disease mutations79691
Blocks (Seattle)QTRTD1
SuperfamilyQ9H974
Human Protein AtlasENSG00000151576
Peptide AtlasQ9H974
HPRD17944
IPIIPI00783033   IPI00074010   IPI00794622   IPI00945792   IPI00979893   IPI00945944   IPI00944953   
Protein Interaction databases
DIP (DOE-UCLA)Q9H974
IntAct (EBI)Q9H974
FunCoupENSG00000151576
BioGRIDQTRTD1
STRING (EMBL)QTRTD1
ZODIACQTRTD1
Ontologies - Pathways
QuickGOQ9H974
Ontology : AmiGOcytoplasm  mitochondrion  zinc ion binding  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  queuosine biosynthetic process  
Ontology : EGO-EBIcytoplasm  mitochondrion  zinc ion binding  queuine tRNA-ribosyltransferase activity  queuosine biosynthetic process  queuosine biosynthetic process  
NDEx NetworkQTRTD1
Atlas of Cancer Signalling NetworkQTRTD1
Wikipedia pathwaysQTRTD1
Orthology - Evolution
OrthoDB79691
GeneTree (enSembl)ENSG00000151576
Phylogenetic Trees/Animal Genes : TreeFamQTRTD1
HOVERGENQ9H974
HOGENOMQ9H974
Homologs : HomoloGeneQTRTD1
Homology/Alignments : Family Browser (UCSC)QTRTD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerQTRTD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)QTRTD1
dbVarQTRTD1
ClinVarQTRTD1
1000_GenomesQTRTD1 
Exome Variant ServerQTRTD1
ExAC (Exome Aggregation Consortium)QTRTD1 (select the gene name)
Genetic variants : HAPMAP79691
Genomic Variants (DGV)QTRTD1 [DGVbeta]
DECIPHER (Syndromes)3:113775582-113807268  ENSG00000151576
CONAN: Copy Number AnalysisQTRTD1 
Mutations
ICGC Data PortalQTRTD1 
TCGA Data PortalQTRTD1 
Broad Tumor PortalQTRTD1
OASIS PortalQTRTD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICQTRTD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDQTRTD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch QTRTD1
DgiDB (Drug Gene Interaction Database)QTRTD1
DoCM (Curated mutations)QTRTD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)QTRTD1 (select a term)
intoGenQTRTD1
Cancer3DQTRTD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenQTRTD1
Genetic Testing Registry QTRTD1
NextProtQ9H974 [Medical]
TSGene79691
GENETestsQTRTD1
Huge Navigator QTRTD1 [HugePedia]
snp3D : Map Gene to Disease79691
BioCentury BCIQQTRTD1
ClinGenQTRTD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79691
Chemical/Pharm GKB GenePA134925851
Clinical trialQTRTD1
Miscellaneous
canSAR (ICR)QTRTD1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineQTRTD1
EVEXQTRTD1
GoPubMedQTRTD1
iHOPQTRTD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:24 CET 2017

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