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R3HCC1 (R3H domain and coiled-coil containing 1)

Identity

Alias_symbol (synonym)DKFZp564N123
Other alias-
HGNC (Hugo) R3HCC1
LocusID (NCBI) 203069
Atlas_Id 72447
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 23288092 and ends at 23296279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ELL (19p13.11) / R3HCC1 (8p21.3)PHF3 (6q12) / R3HCC1 (8p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)R3HCC1   27329
Cards
Entrez_Gene (NCBI)R3HCC1  203069  R3H domain and coiled-coil containing 1
Aliases
GeneCards (Weizmann)R3HCC1
Ensembl hg19 (Hinxton)ENSG00000104679 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104679 [Gene_View]  chr8:23288092-23296279 [Contig_View]  R3HCC1 [Vega]
ICGC DataPortalENSG00000104679
TCGA cBioPortalR3HCC1
AceView (NCBI)R3HCC1
Genatlas (Paris)R3HCC1
WikiGenes203069
SOURCE (Princeton)R3HCC1
Genetics Home Reference (NIH)R3HCC1
Genomic and cartography
GoldenPath hg38 (UCSC)R3HCC1  -     chr8:23288092-23296279 +  8p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)R3HCC1  -     8p21.3   [Description]    (hg19-Feb_2009)
EnsemblR3HCC1 - 8p21.3 [CytoView hg19]  R3HCC1 - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBIR3HCC1 [Mapview hg19]  R3HCC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK293465 AL050297 BC032421 BC050572 BC128545
RefSeq transcript (Entrez)NM_001136108 NM_001301650
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)R3HCC1
Cluster EST : UnigeneHs.458644 [ NCBI ]
CGAP (NCI)Hs.458644
Alternative Splicing GalleryENSG00000104679
Gene ExpressionR3HCC1 [ NCBI-GEO ]   R3HCC1 [ EBI - ARRAY_EXPRESS ]   R3HCC1 [ SEEK ]   R3HCC1 [ MEM ]
Gene Expression Viewer (FireBrowse)R3HCC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203069
GTEX Portal (Tissue expression)R3HCC1
Human Protein AtlasENSG00000104679-R3HCC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3T6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3T6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3T6
Splice isoforms : SwissVarQ9Y3T6
PhosPhoSitePlusQ9Y3T6
Domaine pattern : Prosite (Expaxy)R3H (PS51061)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    R3H_dom   
Domain families : Pfam (Sanger)R3H (PF01424)   
Domain families : Pfam (NCBI)pfam01424   
Domain families : Smart (EMBL)R3H (SM00393)  
Conserved Domain (NCBI)R3HCC1
DMDM Disease mutations203069
Blocks (Seattle)R3HCC1
SuperfamilyQ9Y3T6
Human Protein Atlas [tissue]ENSG00000104679-R3HCC1 [tissue]
Peptide AtlasQ9Y3T6
IPIIPI00000264   IPI00942109   IPI00980659   IPI00978827   IPI00980048   IPI00979456   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3T6
IntAct (EBI)Q9Y3T6
FunCoupENSG00000104679
BioGRIDR3HCC1
STRING (EMBL)R3HCC1
ZODIACR3HCC1
Ontologies - Pathways
QuickGOQ9Y3T6
Ontology : AmiGOnucleic acid binding  exon-exon junction complex  
Ontology : EGO-EBInucleic acid binding  exon-exon junction complex  
NDEx NetworkR3HCC1
Atlas of Cancer Signalling NetworkR3HCC1
Wikipedia pathwaysR3HCC1
Orthology - Evolution
OrthoDB203069
GeneTree (enSembl)ENSG00000104679
Phylogenetic Trees/Animal Genes : TreeFamR3HCC1
HOVERGENQ9Y3T6
HOGENOMQ9Y3T6
Homologs : HomoloGeneR3HCC1
Homology/Alignments : Family Browser (UCSC)R3HCC1
Gene fusions - Rearrangements
Fusion: Tumor Portal R3HCC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerR3HCC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)R3HCC1
dbVarR3HCC1
ClinVarR3HCC1
1000_GenomesR3HCC1 
Exome Variant ServerR3HCC1
ExAC (Exome Aggregation Consortium)ENSG00000104679
GNOMAD BrowserENSG00000104679
Genetic variants : HAPMAP203069
Genomic Variants (DGV)R3HCC1 [DGVbeta]
DECIPHERR3HCC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisR3HCC1 
Mutations
ICGC Data PortalR3HCC1 
TCGA Data PortalR3HCC1 
Broad Tumor PortalR3HCC1
OASIS PortalR3HCC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICR3HCC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDR3HCC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch R3HCC1
DgiDB (Drug Gene Interaction Database)R3HCC1
DoCM (Curated mutations)R3HCC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)R3HCC1 (select a term)
intoGenR3HCC1
Cancer3DR3HCC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenR3HCC1
Genetic Testing Registry R3HCC1
NextProtQ9Y3T6 [Medical]
TSGene203069
GENETestsR3HCC1
Target ValidationR3HCC1
Huge Navigator R3HCC1 [HugePedia]
snp3D : Map Gene to Disease203069
BioCentury BCIQR3HCC1
ClinGenR3HCC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203069
Chemical/Pharm GKB GenePA142671108
Clinical trialR3HCC1
Miscellaneous
canSAR (ICR)R3HCC1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineR3HCC1
EVEXR3HCC1
GoPubMedR3HCC1
iHOPR3HCC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:24:17 CET 2017

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