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R3HCC1L (R3H domain and coiled-coil containing 1-like)

Identity

Alias_namesC10orf28
chromosome 10 open reading frame 28
R3H domain and coiled-coil containing 1-like
Alias_symbol (synonym)GIDRP86
PSORT
Other aliasGIDRP88
HGNC (Hugo) R3HCC1L
LocusID (NCBI) 27291
Atlas_Id 72448
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 99894381 and ends at 100004654 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AP3D1 (19p13.3) / R3HCC1L (10q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)R3HCC1L   23512
Cards
Entrez_Gene (NCBI)R3HCC1L  27291  R3H domain and coiled-coil containing 1-like
AliasesC10orf28; GIDRP86; GIDRP88; PSORT
GeneCards (Weizmann)R3HCC1L
Ensembl hg19 (Hinxton)ENSG00000166024 [Gene_View]  chr10:99894381-100004654 [Contig_View]  R3HCC1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000166024 [Gene_View]  chr10:99894381-100004654 [Contig_View]  R3HCC1L [Vega]
ICGC DataPortalENSG00000166024
TCGA cBioPortalR3HCC1L
AceView (NCBI)R3HCC1L
Genatlas (Paris)R3HCC1L
WikiGenes27291
SOURCE (Princeton)R3HCC1L
Genetics Home Reference (NIH)R3HCC1L
Genomic and cartography
GoldenPath hg19 (UCSC)R3HCC1L  -     chr10:99894381-100004654 +  10q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)R3HCC1L  -     10q24.2   [Description]    (hg38-Dec_2013)
EnsemblR3HCC1L - 10q24.2 [CytoView hg19]  R3HCC1L - 10q24.2 [CytoView hg38]
Mapping of homologs : NCBIR3HCC1L [Mapview hg19]  R3HCC1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF050198 AF525304 AK058187 AK094479 AK292546
RefSeq transcript (Entrez)NM_001256619 NM_001256620 NM_001256621 NM_014472 NM_138469
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)R3HCC1L
Cluster EST : UnigeneHs.419800 [ NCBI ]
CGAP (NCI)Hs.419800
Alternative Splicing GalleryENSG00000166024
Gene ExpressionR3HCC1L [ NCBI-GEO ]   R3HCC1L [ EBI - ARRAY_EXPRESS ]   R3HCC1L [ SEEK ]   R3HCC1L [ MEM ]
Gene Expression Viewer (FireBrowse)R3HCC1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27291
GTEX Portal (Tissue expression)R3HCC1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5L2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5L2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5L2
Splice isoforms : SwissVarQ7Z5L2
PhosPhoSitePlusQ7Z5L2
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)R3HCC1L
DMDM Disease mutations27291
Blocks (Seattle)R3HCC1L
SuperfamilyQ7Z5L2
Human Protein AtlasENSG00000166024
Peptide AtlasQ7Z5L2
HPRD12568
IPIIPI00376196   IPI00384840   IPI01010355   IPI01011536   IPI01009872   IPI00030352   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5L2
IntAct (EBI)Q7Z5L2
FunCoupENSG00000166024
BioGRIDR3HCC1L
STRING (EMBL)R3HCC1L
ZODIACR3HCC1L
Ontologies - Pathways
QuickGOQ7Z5L2
Ontology : AmiGOnucleotide binding  protein binding  exon-exon junction complex  
Ontology : EGO-EBInucleotide binding  protein binding  exon-exon junction complex  
NDEx NetworkR3HCC1L
Atlas of Cancer Signalling NetworkR3HCC1L
Wikipedia pathwaysR3HCC1L
Orthology - Evolution
OrthoDB27291
GeneTree (enSembl)ENSG00000166024
Phylogenetic Trees/Animal Genes : TreeFamR3HCC1L
HOVERGENQ7Z5L2
HOGENOMQ7Z5L2
Homologs : HomoloGeneR3HCC1L
Homology/Alignments : Family Browser (UCSC)R3HCC1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerR3HCC1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)R3HCC1L
dbVarR3HCC1L
ClinVarR3HCC1L
1000_GenomesR3HCC1L 
Exome Variant ServerR3HCC1L
ExAC (Exome Aggregation Consortium)R3HCC1L (select the gene name)
Genetic variants : HAPMAP27291
Genomic Variants (DGV)R3HCC1L [DGVbeta]
DECIPHER (Syndromes)10:99894381-100004654  ENSG00000166024
CONAN: Copy Number AnalysisR3HCC1L 
Mutations
ICGC Data PortalR3HCC1L 
TCGA Data PortalR3HCC1L 
Broad Tumor PortalR3HCC1L
OASIS PortalR3HCC1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICR3HCC1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDR3HCC1L
BioMutasearch R3HCC1L
DgiDB (Drug Gene Interaction Database)R3HCC1L
DoCM (Curated mutations)R3HCC1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)R3HCC1L (select a term)
intoGenR3HCC1L
Cancer3DR3HCC1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenR3HCC1L
Genetic Testing Registry R3HCC1L
NextProtQ7Z5L2 [Medical]
TSGene27291
GENETestsR3HCC1L
Huge Navigator R3HCC1L [HugePedia]
snp3D : Map Gene to Disease27291
BioCentury BCIQR3HCC1L
ClinGenR3HCC1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27291
Chemical/Pharm GKB GenePA134939071
Clinical trialR3HCC1L
Miscellaneous
canSAR (ICR)R3HCC1L (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineR3HCC1L
EVEXR3HCC1L
GoPubMedR3HCC1L
iHOPR3HCC1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:25 CET 2017

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