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R3HDM4 (R3H domain containing 4)

Identity

Alias_namesC19orf22
chromosome 19 open reading frame 22
Alias_symbol (synonym)MGC16353
Other alias
HGNC (Hugo) R3HDM4
LocusID (NCBI) 91300
Atlas_Id 72449
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 896503 and ends at 913225 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARHGEF1 (19q13.2) / R3HDM4 (19p13.3)DCDC5 (11p14.1) / R3HDM4 (19p13.3)R3HDM4 (19p13.3) / PLEKHA4 (19q13.33)
R3HDM4 (19p13.3) / S100A9 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)R3HDM4   28270
Cards
Entrez_Gene (NCBI)R3HDM4  91300  R3H domain containing 4
AliasesC19orf22
GeneCards (Weizmann)R3HDM4
Ensembl hg19 (Hinxton)ENSG00000198858 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198858 [Gene_View]  chr19:896503-913225 [Contig_View]  R3HDM4 [Vega]
ICGC DataPortalENSG00000198858
TCGA cBioPortalR3HDM4
AceView (NCBI)R3HDM4
Genatlas (Paris)R3HDM4
WikiGenes91300
SOURCE (Princeton)R3HDM4
Genetics Home Reference (NIH)R3HDM4
Genomic and cartography
GoldenPath hg38 (UCSC)R3HDM4  -     chr19:896503-913225 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)R3HDM4  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblR3HDM4 - 19p13.3 [CytoView hg19]  R3HDM4 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIR3HDM4 [Mapview hg19]  R3HDM4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000263 AK024622 BC012775
RefSeq transcript (Entrez)NM_138774
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)R3HDM4
Cluster EST : UnigeneHs.557655 [ NCBI ]
CGAP (NCI)Hs.557655
Alternative Splicing GalleryENSG00000198858
Gene ExpressionR3HDM4 [ NCBI-GEO ]   R3HDM4 [ EBI - ARRAY_EXPRESS ]   R3HDM4 [ SEEK ]   R3HDM4 [ MEM ]
Gene Expression Viewer (FireBrowse)R3HDM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91300
GTEX Portal (Tissue expression)R3HDM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96D70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96D70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96D70
Splice isoforms : SwissVarQ96D70
PhosPhoSitePlusQ96D70
Domaine pattern : Prosite (Expaxy)R3H (PS51061)   
Domains : Interpro (EBI)R3H-assoc_dom    R3H_dom   
Domain families : Pfam (Sanger)R3H (PF01424)    R3H-assoc (PF13902)   
Domain families : Pfam (NCBI)pfam01424    pfam13902   
Conserved Domain (NCBI)R3HDM4
DMDM Disease mutations91300
Blocks (Seattle)R3HDM4
SuperfamilyQ96D70
Human Protein AtlasENSG00000198858
Peptide AtlasQ96D70
HPRD16625
IPIIPI00060714   
Protein Interaction databases
DIP (DOE-UCLA)Q96D70
IntAct (EBI)Q96D70
FunCoupENSG00000198858
BioGRIDR3HDM4
STRING (EMBL)R3HDM4
ZODIACR3HDM4
Ontologies - Pathways
QuickGOQ96D70
Ontology : AmiGOnucleic acid binding  nucleus  
Ontology : EGO-EBInucleic acid binding  nucleus  
NDEx NetworkR3HDM4
Atlas of Cancer Signalling NetworkR3HDM4
Wikipedia pathwaysR3HDM4
Orthology - Evolution
OrthoDB91300
GeneTree (enSembl)ENSG00000198858
Phylogenetic Trees/Animal Genes : TreeFamR3HDM4
HOVERGENQ96D70
HOGENOMQ96D70
Homologs : HomoloGeneR3HDM4
Homology/Alignments : Family Browser (UCSC)R3HDM4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerR3HDM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)R3HDM4
dbVarR3HDM4
ClinVarR3HDM4
1000_GenomesR3HDM4 
Exome Variant ServerR3HDM4
ExAC (Exome Aggregation Consortium)R3HDM4 (select the gene name)
Genetic variants : HAPMAP91300
Genomic Variants (DGV)R3HDM4 [DGVbeta]
DECIPHERR3HDM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisR3HDM4 
Mutations
ICGC Data PortalR3HDM4 
TCGA Data PortalR3HDM4 
Broad Tumor PortalR3HDM4
OASIS PortalR3HDM4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDR3HDM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch R3HDM4
DgiDB (Drug Gene Interaction Database)R3HDM4
DoCM (Curated mutations)R3HDM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)R3HDM4 (select a term)
intoGenR3HDM4
Cancer3DR3HDM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenR3HDM4
Genetic Testing Registry R3HDM4
NextProtQ96D70 [Medical]
TSGene91300
GENETestsR3HDM4
Target ValidationR3HDM4
Huge Navigator R3HDM4 [HugePedia]
snp3D : Map Gene to Disease91300
BioCentury BCIQR3HDM4
ClinGenR3HDM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91300
Chemical/Pharm GKB GenePA134902004
Clinical trialR3HDM4
Miscellaneous
canSAR (ICR)R3HDM4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineR3HDM4
EVEXR3HDM4
GoPubMedR3HDM4
iHOPR3HDM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:04 CEST 2017

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