Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

R3HDML (R3H domain containing like)

Identity

Alias_namesR3H domain (binds single-stranded nucleic acids) containing-like
R3H domain containing-like
Alias_symbol (synonym)dJ881L22.3
Other alias
HGNC (Hugo) R3HDML
LocusID (NCBI) 140902
Atlas_Id 72450
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44337158 and ends at 44350792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
R3HDML (20q13.12) / DIAPH3 (13q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)R3HDML   16249
Cards
Entrez_Gene (NCBI)R3HDML  140902  R3H domain containing like
AliasesdJ881L22.3
GeneCards (Weizmann)R3HDML
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:44337158-44350792 [Contig_View]  R3HDML [Vega]
TCGA cBioPortalR3HDML
AceView (NCBI)R3HDML
Genatlas (Paris)R3HDML
WikiGenes140902
SOURCE (Princeton)R3HDML
Genetics Home Reference (NIH)R3HDML
Genomic and cartography
GoldenPath hg38 (UCSC)R3HDML  -     chr20:44337158-44350792 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)R3HDML  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblR3HDML - 20q13.12 [CytoView hg19]  R3HDML - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIR3HDML [Mapview hg19]  R3HDML [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC107048
RefSeq transcript (Entrez)NM_178491
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)R3HDML
Cluster EST : UnigeneHs.580807 [ NCBI ]
CGAP (NCI)Hs.580807
Gene ExpressionR3HDML [ NCBI-GEO ]   R3HDML [ EBI - ARRAY_EXPRESS ]   R3HDML [ SEEK ]   R3HDML [ MEM ]
Gene Expression Viewer (FireBrowse)R3HDML [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140902
GTEX Portal (Tissue expression)R3HDML
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3Y0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3Y0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3Y0
Splice isoforms : SwissVarQ9H3Y0
PhosPhoSitePlusQ9H3Y0
Domains : Interpro (EBI)Allrgn_V5/Tpx1    CAP_domain   
Domain families : Pfam (Sanger)CAP (PF00188)   
Domain families : Pfam (NCBI)pfam00188   
Domain families : Smart (EMBL)SCP (SM00198)  
Conserved Domain (NCBI)R3HDML
DMDM Disease mutations140902
Blocks (Seattle)R3HDML
SuperfamilyQ9H3Y0
Peptide AtlasQ9H3Y0
HPRD17945
IPIIPI00024338   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3Y0
IntAct (EBI)Q9H3Y0
BioGRIDR3HDML
STRING (EMBL)R3HDML
ZODIACR3HDML
Ontologies - Pathways
QuickGOQ9H3Y0
Ontology : AmiGOextracellular region  negative regulation of peptidase activity  peptidase inhibitor activity  
Ontology : EGO-EBIextracellular region  negative regulation of peptidase activity  peptidase inhibitor activity  
NDEx NetworkR3HDML
Atlas of Cancer Signalling NetworkR3HDML
Wikipedia pathwaysR3HDML
Orthology - Evolution
OrthoDB140902
Phylogenetic Trees/Animal Genes : TreeFamR3HDML
HOVERGENQ9H3Y0
HOGENOMQ9H3Y0
Homologs : HomoloGeneR3HDML
Homology/Alignments : Family Browser (UCSC)R3HDML
Gene fusions - Rearrangements
Tumor Fusion PortalR3HDML
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerR3HDML [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)R3HDML
dbVarR3HDML
ClinVarR3HDML
1000_GenomesR3HDML 
Exome Variant ServerR3HDML
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP140902
Genomic Variants (DGV)R3HDML [DGVbeta]
DECIPHERR3HDML [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisR3HDML 
Mutations
ICGC Data PortalR3HDML 
TCGA Data PortalR3HDML 
Broad Tumor PortalR3HDML
OASIS PortalR3HDML [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICR3HDML  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDR3HDML
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch R3HDML
DgiDB (Drug Gene Interaction Database)R3HDML
DoCM (Curated mutations)R3HDML (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)R3HDML (select a term)
intoGenR3HDML
Cancer3DR3HDML(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETR3HDML
MedgenR3HDML
Genetic Testing Registry R3HDML
NextProtQ9H3Y0 [Medical]
TSGene140902
GENETestsR3HDML
Target ValidationR3HDML
Huge Navigator R3HDML [HugePedia]
snp3D : Map Gene to Disease140902
BioCentury BCIQR3HDML
ClinGenR3HDML
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140902
Chemical/Pharm GKB GenePA34099
Clinical trialR3HDML
Miscellaneous
canSAR (ICR)R3HDML (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineR3HDML
EVEXR3HDML
GoPubMedR3HDML
iHOPR3HDML
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:08 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.