Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RAB11A (RAB11A, member RAS oncogene family)

Identity

Other namesYL8
HGNC (Hugo) RAB11A
LocusID (NCBI) 8766
Location 15q22.31
Location_base_pair Starts at 66161797 and ends at 66184329 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RAB11A   9760
Cards
Entrez_Gene (NCBI)RAB11A  8766  RAB11A, member RAS oncogene family
GeneCards (Weizmann)RAB11A
Ensembl (Hinxton)ENSG00000103769 [Gene_View]  chr15:66161797-66184329 [Contig_View]  RAB11A [Vega]
ICGC DataPortalENSG00000103769
cBioPortalRAB11A
AceView (NCBI)RAB11A
Genatlas (Paris)RAB11A
WikiGenes8766
SOURCE (Princeton)NM_001206836 NM_004663
Genomic and cartography
GoldenPath (UCSC)RAB11A  -  15q22.31   chr15:66161797-66184329 +  15q22.31   [Description]    (hg19-Feb_2009)
EnsemblRAB11A - 15q22.31 [CytoView]
Mapping of homologs : NCBIRAB11A [Mapview]
OMIM605570   
Gene and transcription
Genbank (Entrez)AF000231 AF498946 AK054930 AK297549 AK298961
RefSeq transcript (Entrez)NM_001206836 NM_004663
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838218 NW_004929398
Consensus coding sequences : CCDS (NCBI)RAB11A
Cluster EST : UnigeneHs.321541 [ NCBI ]
CGAP (NCI)Hs.321541
Alternative Splicing : Fast-db (Paris)GSHG0009943
Alternative Splicing GalleryENSG00000103769
Gene ExpressionRAB11A [ NCBI-GEO ]     RAB11A [ SEEK ]   RAB11A [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62491 (Uniprot)
NextProtP62491  [Medical]
With graphics : InterProP62491
Splice isoforms : SwissVarP62491 (Swissvar)
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase [organisation]   Small_GTP-bd_dom [organisation]   Small_GTPase [organisation]   Small_GTPase_Rab_type [organisation]  
Related proteins : CluSTrP62491
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Domain families : Smart (EMBL)RAB (SM00175)  
DMDM Disease mutations8766
Blocks (Seattle)P62491
PDB (SRS)1OIV    1OIW    1OIX    1YZK    2D7C    2GZD    2GZH    2HV8    4C4P    4LWZ    4LX0   
PDB (PDBSum)1OIV    1OIW    1OIX    1YZK    2D7C    2GZD    2GZH    2HV8    4C4P    4LWZ    4LX0   
PDB (IMB)1OIV    1OIW    1OIX    1YZK    2D7C    2GZD    2GZH    2HV8    4C4P    4LWZ    4LX0   
PDB (RSDB)1OIV    1OIW    1OIX    1YZK    2D7C    2GZD    2GZH    2HV8    4C4P    4LWZ    4LX0   
Human Protein AtlasENSG00000103769 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP62491
HPRD05715
IPIIPI01022454   
Protein Interaction databases
DIP (DOE-UCLA)P62491
IntAct (EBI)P62491
FunCoupENSG00000103769
BioGRIDRAB11A
InParanoidP62491
Interologous Interaction database P62491
IntegromeDBRAB11A
STRING (EMBL)RAB11A
Ontologies - Pathways
Ontology : AmiGOcytokinesis  GTPase activity  protein binding  GTP binding  mitochondrion  trans-Golgi network  plasma membrane  GTP catabolic process  water transport  small GTPase mediated signal transduction  protein transport  vesicle-mediated transport  syntaxin binding  transport vesicle  axon  cytoplasmic vesicle membrane  phagocytic vesicle membrane  neuron projection development  cleavage furrow  melanosome transport  protein complex  phagocytic vesicle  positive regulation of axon extension  regulation of long-term neuronal synaptic plasticity  plasma membrane to endosome transport  perinuclear region of cytoplasm  regulation of protein transport  recycling endosome  recycling endosome membrane  transmembrane transport  extracellular vesicular exosome  protein localization to plasma membrane  
Ontology : EGO-EBIcytokinesis  GTPase activity  protein binding  GTP binding  mitochondrion  trans-Golgi network  plasma membrane  GTP catabolic process  water transport  small GTPase mediated signal transduction  protein transport  vesicle-mediated transport  syntaxin binding  transport vesicle  axon  cytoplasmic vesicle membrane  phagocytic vesicle membrane  neuron projection development  cleavage furrow  melanosome transport  protein complex  phagocytic vesicle  positive regulation of axon extension  regulation of long-term neuronal synaptic plasticity  plasma membrane to endosome transport  perinuclear region of cytoplasm  regulation of protein transport  recycling endosome  recycling endosome membrane  transmembrane transport  extracellular vesicular exosome  protein localization to plasma membrane  
Pathways : BIOCARTARab GTPases Mark Targets In The Endocytotic Machinery [Genes]   
Pathways : KEGGEndocytosis    Endocrine and other factor-regulated calcium reabsorption    Vasopressin-regulated water reabsorption    Pancreatic secretion   
Protein Interaction DatabaseRAB11A
Wikipedia pathwaysRAB11A
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RAB11A
snp3D : Map Gene to Disease8766
SNP (GeneSNP Utah)RAB11A
SNP : HGBaseRAB11A
Genetic variants : HAPMAPRAB11A
Exome VariantRAB11A
1000_GenomesRAB11A 
ICGC programENSG00000103769 
Somatic Mutations in Cancer : COSMICRAB11A 
CONAN: Copy Number AnalysisRAB11A 
Mutations and Diseases : HGMDRAB11A
Genomic VariantsRAB11A  RAB11A [DGVbeta]
dbVarRAB11A
ClinVarRAB11A
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM605570   
MedgenRAB11A
GENETestsRAB11A
Disease Genetic AssociationRAB11A
Huge Navigator RAB11A [HugePedia]  RAB11A [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRAB11A
Homology/Alignments : Family Browser (UCSC)RAB11A
Phylogenetic Trees/Animal Genes : TreeFamRAB11A
Chemical/Protein Interactions : CTD8766
Chemical/Pharm GKB GenePA34101
Clinical trialRAB11A
Cancer Resource (Charite)ENSG00000103769
Other databases
Probes
Litterature
PubMed122 Pubmed reference(s) in Entrez
CoreMineRAB11A
iHOPRAB11A
OncoSearchRAB11A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:45:01 CEST 2014

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