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RAB11B (RAB11B, member RAS oncogene family)

Identity

Alias_symbol (synonym)H-YPT3
Other alias
HGNC (Hugo) RAB11B
LocusID (NCBI) 9230
Atlas_Id 41957
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 8390321 and ends at 8404433 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LILRA2 (19q13.42) / RAB11B (19p13.2)RAB11B (19p13.2) / LOC388796 ()RAB11B (19p13.2) / RAB11B (19p13.2)
RAB11B (19p13.2) / RRBP1 (20p12.1)RAB11B (19p13.2) / SLC5A6 (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB11B   9761
Cards
Entrez_Gene (NCBI)RAB11B  9230  RAB11B, member RAS oncogene family
AliasesH-YPT3
GeneCards (Weizmann)RAB11B
Ensembl hg19 (Hinxton)ENSG00000185236 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185236 [Gene_View]  chr19:8390321-8404433 [Contig_View]  RAB11B [Vega]
ICGC DataPortalENSG00000185236
TCGA cBioPortalRAB11B
AceView (NCBI)RAB11B
Genatlas (Paris)RAB11B
WikiGenes9230
SOURCE (Princeton)RAB11B
Genetics Home Reference (NIH)RAB11B
Genomic and cartography
GoldenPath hg38 (UCSC)RAB11B  -     chr19:8390321-8404433 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB11B  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblRAB11B - 19p13.2 [CytoView hg19]  RAB11B - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIRAB11B [Mapview hg19]  RAB11B [Mapview hg38]
OMIM604198   
Gene and transcription
Genbank (Entrez)AF498947 AK225036 AK225642 AK297498 AK310573
RefSeq transcript (Entrez)NM_004218
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB11B
Cluster EST : UnigeneHs.626404 [ NCBI ]
CGAP (NCI)Hs.626404
Alternative Splicing GalleryENSG00000185236
Gene ExpressionRAB11B [ NCBI-GEO ]   RAB11B [ EBI - ARRAY_EXPRESS ]   RAB11B [ SEEK ]   RAB11B [ MEM ]
Gene Expression Viewer (FireBrowse)RAB11B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9230
GTEX Portal (Tissue expression)RAB11B
Human Protein AtlasENSG00000185236-RAB11B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15907   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15907  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15907
Splice isoforms : SwissVarQ15907
PhosPhoSitePlusQ15907
Domaine pattern : Prosite (Expaxy)RAB (PS51419)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase   
Domain families : Pfam (Sanger)Ras (PF00071)   
Domain families : Pfam (NCBI)pfam00071   
Conserved Domain (NCBI)RAB11B
DMDM Disease mutations9230
Blocks (Seattle)RAB11B
PDB (SRS)2F9L    2F9M    4OJK   
PDB (PDBSum)2F9L    2F9M    4OJK   
PDB (IMB)2F9L    2F9M    4OJK   
PDB (RSDB)2F9L    2F9M    4OJK   
Structural Biology KnowledgeBase2F9L    2F9M    4OJK   
SCOP (Structural Classification of Proteins)2F9L    2F9M    4OJK   
CATH (Classification of proteins structures)2F9L    2F9M    4OJK   
SuperfamilyQ15907
Human Protein Atlas [tissue]ENSG00000185236-RAB11B [tissue]
Peptide AtlasQ15907
HPRD05009
IPIIPI00020436   IPI00978887   
Protein Interaction databases
DIP (DOE-UCLA)Q15907
IntAct (EBI)Q15907
FunCoupENSG00000185236
BioGRIDRAB11B
STRING (EMBL)RAB11B
ZODIACRAB11B
Ontologies - Pathways
QuickGOQ15907
Ontology : AmiGOreceptor recycling  GTPase activity  protein binding  GTP binding  mitochondrion  cytosol  synaptic vesicle  GDP binding  cell junction  phagocytic vesicle membrane  myosin V binding  melanosome transport  melanosome transport  transferrin transport  insulin secretion involved in cellular response to glucose stimulus  regulation of anion transport  constitutive secretory pathway  regulated exocytosis  regulated exocytosis  cadherin binding  phagocytic vesicle  recycling endosome  recycling endosome  recycling endosome membrane  membrane organization  extracellular exosome  cellular response to acidic pH  establishment of protein localization to membrane  anchored component of synaptic vesicle membrane  retrograde transport, endosome to plasma membrane  regulation of protein localization to cell surface  regulation of endocytic recycling  
Ontology : EGO-EBIreceptor recycling  GTPase activity  protein binding  GTP binding  mitochondrion  cytosol  synaptic vesicle  GDP binding  cell junction  phagocytic vesicle membrane  myosin V binding  melanosome transport  melanosome transport  transferrin transport  insulin secretion involved in cellular response to glucose stimulus  regulation of anion transport  constitutive secretory pathway  regulated exocytosis  regulated exocytosis  cadherin binding  phagocytic vesicle  recycling endosome  recycling endosome  recycling endosome membrane  membrane organization  extracellular exosome  cellular response to acidic pH  establishment of protein localization to membrane  anchored component of synaptic vesicle membrane  retrograde transport, endosome to plasma membrane  regulation of protein localization to cell surface  regulation of endocytic recycling  
Pathways : KEGGEndocytosis    Vasopressin-regulated water reabsorption   
NDEx NetworkRAB11B
Atlas of Cancer Signalling NetworkRAB11B
Wikipedia pathwaysRAB11B
Orthology - Evolution
OrthoDB9230
GeneTree (enSembl)ENSG00000185236
Phylogenetic Trees/Animal Genes : TreeFamRAB11B
HOVERGENQ15907
HOGENOMQ15907
Homologs : HomoloGeneRAB11B
Homology/Alignments : Family Browser (UCSC)RAB11B
Gene fusions - Rearrangements
Tumor Fusion PortalRAB11B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB11B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB11B
dbVarRAB11B
ClinVarRAB11B
1000_GenomesRAB11B 
Exome Variant ServerRAB11B
ExAC (Exome Aggregation Consortium)ENSG00000185236
GNOMAD BrowserENSG00000185236
Genetic variants : HAPMAP9230
Genomic Variants (DGV)RAB11B [DGVbeta]
DECIPHERRAB11B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB11B 
Mutations
ICGC Data PortalRAB11B 
TCGA Data PortalRAB11B 
Broad Tumor PortalRAB11B
OASIS PortalRAB11B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB11B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB11B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RAB11B
DgiDB (Drug Gene Interaction Database)RAB11B
DoCM (Curated mutations)RAB11B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB11B (select a term)
intoGenRAB11B
Cancer3DRAB11B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604198   
Orphanet
DisGeNETRAB11B
MedgenRAB11B
Genetic Testing Registry RAB11B
NextProtQ15907 [Medical]
TSGene9230
GENETestsRAB11B
Target ValidationRAB11B
Huge Navigator RAB11B [HugePedia]
snp3D : Map Gene to Disease9230
BioCentury BCIQRAB11B
ClinGenRAB11B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9230
Chemical/Pharm GKB GenePA34102
Clinical trialRAB11B
Miscellaneous
canSAR (ICR)RAB11B (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB11B
EVEXRAB11B
GoPubMedRAB11B
iHOPRAB11B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:31:12 CET 2017

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