Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RAB11FIP1 (RAB11 family interacting protein 1)

Identity

Alias_namesRAB11 family interacting protein 1 (class I)
Alias_symbol (synonym)RCP
FLJ22622
FLJ22524
Rab11-FIP1
Other aliasNOEL1A
rab11-FIP1
HGNC (Hugo) RAB11FIP1
LocusID (NCBI) 80223
Atlas_Id 50552
Location 8p11.23  [Link to chromosome band 8p11]
Location_base_pair Starts at 37858947 and ends at 37899497 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APP (21q21.3) / RAB11FIP1 (8p11.23)GOLPH3 (5p13.3) / RAB11FIP1 (8p11.23)IK (5q31.3) / RAB11FIP1 (8p11.23)
KAT6A (8p11.21) / RAB11FIP1 (8p11.23)RAB11FIP1 (8p11.23) / HTRA4 (8p11.22)RAB11FIP1 (8p11.23) / KCNU1 (8p11.23)
RAB11FIP1 (8p11.23) / RAB11FIP1 (8p11.23)RAB11FIP1 (8p11.23) / SV2C (5q13.3)RAB11FIP1 (8p11.23) / UNC5D (8p12)
RAB11FIP1 (8p11.23) / ZDHHC24 (11q13.2)YWHAG (7q11.23) / RAB11FIP1 (8p11.23)KAT6A 8p11.21 / RAB11FIP1 8p11.23
RAB11FIP1 8p11.23 / HTRA4 8p11.22RAB11FIP1 8p11.23 / KCNU1 8p11.23RAB11FIP1 8p11.23 / UNC5D 8p12
RAB11FIP1 8p11.23 / ZDHHC24 11q13.2YWHAG 7q11.23 / RAB11FIP1 8p11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB11FIP1   30265
Cards
Entrez_Gene (NCBI)RAB11FIP1  80223  RAB11 family interacting protein 1
AliasesNOEL1A; RCP; rab11-FIP1
GeneCards (Weizmann)RAB11FIP1
Ensembl hg19 (Hinxton)ENSG00000156675 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156675 [Gene_View]  chr8:37858947-37899497 [Contig_View]  RAB11FIP1 [Vega]
ICGC DataPortalENSG00000156675
TCGA cBioPortalRAB11FIP1
AceView (NCBI)RAB11FIP1
Genatlas (Paris)RAB11FIP1
WikiGenes80223
SOURCE (Princeton)RAB11FIP1
Genetics Home Reference (NIH)RAB11FIP1
Genomic and cartography
GoldenPath hg38 (UCSC)RAB11FIP1  -     chr8:37858947-37899497 -  8p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB11FIP1  -     8p11.23   [Description]    (hg19-Feb_2009)
EnsemblRAB11FIP1 - 8p11.23 [CytoView hg19]  RAB11FIP1 - 8p11.23 [CytoView hg38]
Mapping of homologs : NCBIRAB11FIP1 [Mapview hg19]  RAB11FIP1 [Mapview hg38]
OMIM608737   
Gene and transcription
Genbank (Entrez)AF368294 AK026177 AK026275 AK090437 AK092296
RefSeq transcript (Entrez)NM_001002233 NM_001002814 NM_025151
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB11FIP1
Cluster EST : UnigeneHs.191179 [ NCBI ]
CGAP (NCI)Hs.191179
Alternative Splicing GalleryENSG00000156675
Gene ExpressionRAB11FIP1 [ NCBI-GEO ]   RAB11FIP1 [ EBI - ARRAY_EXPRESS ]   RAB11FIP1 [ SEEK ]   RAB11FIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB11FIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80223
GTEX Portal (Tissue expression)RAB11FIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6WKZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6WKZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6WKZ4
Splice isoforms : SwissVarQ6WKZ4
PhosPhoSitePlusQ6WKZ4
Domaine pattern : Prosite (Expaxy)C2 (PS50004)    FIP_RBD (PS51511)   
Domains : Interpro (EBI)C2_dom    Rab-bd_FIP-RBD   
Domain families : Pfam (Sanger)C2 (PF00168)    RBD-FIP (PF09457)   
Domain families : Pfam (NCBI)pfam00168    pfam09457   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)RAB11FIP1
DMDM Disease mutations80223
Blocks (Seattle)RAB11FIP1
PDB (SRS)4D0G   
PDB (PDBSum)4D0G   
PDB (IMB)4D0G   
PDB (RSDB)4D0G   
Structural Biology KnowledgeBase4D0G   
SCOP (Structural Classification of Proteins)4D0G   
CATH (Classification of proteins structures)4D0G   
SuperfamilyQ6WKZ4
Human Protein AtlasENSG00000156675
Peptide AtlasQ6WKZ4
HPRD09787
IPIIPI00335140   IPI00556406   IPI00465151   IPI00419433   IPI00472256   IPI01024914   IPI00868994   IPI00985465   
Protein Interaction databases
DIP (DOE-UCLA)Q6WKZ4
IntAct (EBI)Q6WKZ4
FunCoupENSG00000156675
BioGRIDRAB11FIP1
STRING (EMBL)RAB11FIP1
ZODIACRAB11FIP1
Ontologies - Pathways
QuickGOQ6WKZ4
Ontology : AmiGOcytoplasm  cytosol  protein transport  Rab GTPase binding  phagocytic vesicle membrane  intracellular membrane-bounded organelle  intracellular membrane-bounded organelle  regulated exocytosis  recycling endosome  negative regulation of adiponectin secretion  
Ontology : EGO-EBIcytoplasm  cytosol  protein transport  Rab GTPase binding  phagocytic vesicle membrane  intracellular membrane-bounded organelle  intracellular membrane-bounded organelle  regulated exocytosis  recycling endosome  negative regulation of adiponectin secretion  
Pathways : KEGGEndocytosis   
NDEx NetworkRAB11FIP1
Atlas of Cancer Signalling NetworkRAB11FIP1
Wikipedia pathwaysRAB11FIP1
Orthology - Evolution
OrthoDB80223
GeneTree (enSembl)ENSG00000156675
Phylogenetic Trees/Animal Genes : TreeFamRAB11FIP1
HOVERGENQ6WKZ4
HOGENOMQ6WKZ4
Homologs : HomoloGeneRAB11FIP1
Homology/Alignments : Family Browser (UCSC)RAB11FIP1
Gene fusions - Rearrangements
Fusion : MitelmanKAT6A/RAB11FIP1 [8p11.21/8p11.23]  [t(8;8)(p11;p11)]  
Fusion : MitelmanRAB11FIP1/HTRA4 [8p11.23/8p11.22]  [t(8;8)(p11;p11)]  
Fusion : MitelmanRAB11FIP1/KCNU1 [8p11.23/8p11.23]  [t(8;8)(p11;p11)]  
Fusion : MitelmanRAB11FIP1/UNC5D [8p11.23/8p12]  [t(8;8)(p11;p12)]  
Fusion : MitelmanRAB11FIP1/ZDHHC24 [8p11.23/11q13.2]  [t(8;11)(p11;q13)]  
Fusion : MitelmanYWHAG/RAB11FIP1 [7q11.23/8p11.23]  [t(7;8)(q11;p11)]  
Fusion: TCGAKAT6A 8p11.21 RAB11FIP1 8p11.23 LUAD
Fusion: TCGARAB11FIP1 8p11.23 HTRA4 8p11.22 BRCA
Fusion: TCGARAB11FIP1 8p11.23 KCNU1 8p11.23 BLCA
Fusion: TCGARAB11FIP1 8p11.23 UNC5D 8p12 BRCA
Fusion: TCGARAB11FIP1 8p11.23 ZDHHC24 11q13.2 BRCA
Fusion: TCGAYWHAG 7q11.23 RAB11FIP1 8p11.23 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB11FIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB11FIP1
dbVarRAB11FIP1
ClinVarRAB11FIP1
1000_GenomesRAB11FIP1 
Exome Variant ServerRAB11FIP1
ExAC (Exome Aggregation Consortium)RAB11FIP1 (select the gene name)
Genetic variants : HAPMAP80223
Genomic Variants (DGV)RAB11FIP1 [DGVbeta]
DECIPHERRAB11FIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB11FIP1 
Mutations
ICGC Data PortalRAB11FIP1 
TCGA Data PortalRAB11FIP1 
Broad Tumor PortalRAB11FIP1
OASIS PortalRAB11FIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB11FIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB11FIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB11FIP1
DgiDB (Drug Gene Interaction Database)RAB11FIP1
DoCM (Curated mutations)RAB11FIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB11FIP1 (select a term)
intoGenRAB11FIP1
Cancer3DRAB11FIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608737   
Orphanet
MedgenRAB11FIP1
Genetic Testing Registry RAB11FIP1
NextProtQ6WKZ4 [Medical]
TSGene80223
GENETestsRAB11FIP1
Target ValidationRAB11FIP1
Huge Navigator RAB11FIP1 [HugePedia]
snp3D : Map Gene to Disease80223
BioCentury BCIQRAB11FIP1
ClinGenRAB11FIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80223
Chemical/Pharm GKB GenePA134937501
Clinical trialRAB11FIP1
Miscellaneous
canSAR (ICR)RAB11FIP1 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB11FIP1
EVEXRAB11FIP1
GoPubMedRAB11FIP1
iHOPRAB11FIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:12:14 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.