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RAB11FIP2 (RAB11 family interacting protein 2)

Identity

Alias (NCBI)Rab11-FIP2
nRip11
HGNC (Hugo) RAB11FIP2
HGNC Alias symbKIAA0941
nRip11
Rab11-FIP2
HGNC Previous nameRAB11 family interacting protein 2 (class I)
LocusID (NCBI) 22841
Atlas_Id 55843
Location 10q26.11  [Link to chromosome band 10q26]
Location_base_pair Starts at 118004916 and ends at 118046941 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CADM4 (19q13.31) / RAB11FIP2 (10q26.11)RAB11FIP2 (10q26.11) / HMGXB4 (22q12.3)RAB11FIP2 (10q26.11) / RAB11FIP2 (10q26.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RAB11FIP2   29152
Cards
Entrez_Gene (NCBI)RAB11FIP2    RAB11 family interacting protein 2
AliasesRab11-FIP2; nRip11
GeneCards (Weizmann)RAB11FIP2
Ensembl hg19 (Hinxton)ENSG00000107560 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107560 [Gene_View]  ENSG00000107560 [Sequence]  chr10:118004916-118046941 [Contig_View]  RAB11FIP2 [Vega]
ICGC DataPortalENSG00000107560
TCGA cBioPortalRAB11FIP2
AceView (NCBI)RAB11FIP2
Genatlas (Paris)RAB11FIP2
SOURCE (Princeton)RAB11FIP2
Genetics Home Reference (NIH)RAB11FIP2
Genomic and cartography
GoldenPath hg38 (UCSC)RAB11FIP2  -     chr10:118004916-118046941 -  10q26.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB11FIP2  -     10q26.11   [Description]    (hg19-Feb_2009)
GoldenPathRAB11FIP2 - 10q26.11 [CytoView hg19]  RAB11FIP2 - 10q26.11 [CytoView hg38]
ImmunoBaseENSG00000107560
Genome Data Viewer NCBIRAB11FIP2 [Mapview hg19]  
OMIM608599   
Gene and transcription
Genbank (Entrez)AB023158 AY037299 BC075073 BC075074 BM975322
RefSeq transcript (Entrez)NM_001330167 NM_014904
Consensus coding sequences : CCDS (NCBI)RAB11FIP2
Gene ExpressionRAB11FIP2 [ NCBI-GEO ]   RAB11FIP2 [ EBI - ARRAY_EXPRESS ]   RAB11FIP2 [ SEEK ]   RAB11FIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB11FIP2 [ Firebrowse - Broad ]
GenevisibleExpression of RAB11FIP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22841
GTEX Portal (Tissue expression)RAB11FIP2
Human Protein AtlasENSG00000107560-RAB11FIP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L804   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L804  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L804
PhosPhoSitePlusQ7L804
Domaine pattern : Prosite (Expaxy)C2 (PS50004)    FIP_RBD (PS51511)   
Domains : Interpro (EBI)C2_dom    C2_domain_sf    FIP-RBD_C_sf    FIP_classI    Rab-bd_FIP-RBD   
Domain families : Pfam (Sanger)C2 (PF00168)    RBD-FIP (PF09457)   
Domain families : Pfam (NCBI)pfam00168    pfam09457   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)RAB11FIP2
PDB (RSDB)2GZD    2GZH    2K6S    3TSO    4C4P    6S8X   
PDB Europe2GZD    2GZH    2K6S    3TSO    4C4P    6S8X   
PDB (PDBSum)2GZD    2GZH    2K6S    3TSO    4C4P    6S8X   
PDB (IMB)2GZD    2GZH    2K6S    3TSO    4C4P    6S8X   
Structural Biology KnowledgeBase2GZD    2GZH    2K6S    3TSO    4C4P    6S8X   
SCOP (Structural Classification of Proteins)2GZD    2GZH    2K6S    3TSO    4C4P    6S8X   
CATH (Classification of proteins structures)2GZD    2GZH    2K6S    3TSO    4C4P    6S8X   
SuperfamilyQ7L804
AlphaFold pdb e-kbQ7L804   
Human Protein Atlas [tissue]ENSG00000107560-RAB11FIP2 [tissue]
HPRD10548
Protein Interaction databases
DIP (DOE-UCLA)Q7L804
IntAct (EBI)Q7L804
BioGRIDRAB11FIP2
STRING (EMBL)RAB11FIP2
ZODIACRAB11FIP2
Ontologies - Pathways
QuickGOQ7L804
Ontology : AmiGOphagocytic cup  phagocytic cup  renal water homeostasis  protein binding  nucleoplasm  endosome  endosome  phagocytosis  protein kinase binding  establishment of cell polarity  cytoplasmic vesicle membrane  small GTPase binding  TRAM-dependent toll-like receptor 4 signaling pathway  insulin secretion involved in cellular response to glucose stimulus  identical protein binding  protein homodimerization activity  cell projection  intracellular membrane-bounded organelle  intracellular membrane-bounded organelle  positive regulation of GTPase activity  regulated exocytosis  regulated exocytosis  recycling endosome membrane  positive regulation of protein localization to plasma membrane  
Ontology : EGO-EBIphagocytic cup  phagocytic cup  renal water homeostasis  protein binding  nucleoplasm  endosome  endosome  phagocytosis  protein kinase binding  establishment of cell polarity  cytoplasmic vesicle membrane  small GTPase binding  TRAM-dependent toll-like receptor 4 signaling pathway  insulin secretion involved in cellular response to glucose stimulus  identical protein binding  protein homodimerization activity  cell projection  intracellular membrane-bounded organelle  intracellular membrane-bounded organelle  positive regulation of GTPase activity  regulated exocytosis  regulated exocytosis  recycling endosome membrane  positive regulation of protein localization to plasma membrane  
Pathways : KEGGEndocytosis   
NDEx NetworkRAB11FIP2
Atlas of Cancer Signalling NetworkRAB11FIP2
Wikipedia pathwaysRAB11FIP2
Orthology - Evolution
OrthoDB22841
GeneTree (enSembl)ENSG00000107560
Phylogenetic Trees/Animal Genes : TreeFamRAB11FIP2
Homologs : HomoloGeneRAB11FIP2
Homology/Alignments : Family Browser (UCSC)RAB11FIP2
Gene fusions - Rearrangements
Fusion : QuiverRAB11FIP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB11FIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB11FIP2
dbVarRAB11FIP2
ClinVarRAB11FIP2
MonarchRAB11FIP2
1000_GenomesRAB11FIP2 
Exome Variant ServerRAB11FIP2
GNOMAD BrowserENSG00000107560
Varsome BrowserRAB11FIP2
ACMGRAB11FIP2 variants
VarityQ7L804
Genomic Variants (DGV)RAB11FIP2 [DGVbeta]
DECIPHERRAB11FIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB11FIP2 
Mutations
ICGC Data PortalRAB11FIP2 
TCGA Data PortalRAB11FIP2 
Broad Tumor PortalRAB11FIP2
OASIS PortalRAB11FIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB11FIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRAB11FIP2
Mutations and Diseases : HGMDRAB11FIP2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRAB11FIP2
DgiDB (Drug Gene Interaction Database)RAB11FIP2
DoCM (Curated mutations)RAB11FIP2
CIViC (Clinical Interpretations of Variants in Cancer)RAB11FIP2
Cancer3DRAB11FIP2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608599   
Orphanet
DisGeNETRAB11FIP2
MedgenRAB11FIP2
Genetic Testing Registry RAB11FIP2
NextProtQ7L804 [Medical]
GENETestsRAB11FIP2
Target ValidationRAB11FIP2
Huge Navigator RAB11FIP2 [HugePedia]
ClinGenRAB11FIP2
Clinical trials, drugs, therapy
MyCancerGenomeRAB11FIP2
Protein Interactions : CTDRAB11FIP2
Pharm GKB GenePA134961225
PharosQ7L804
Clinical trialRAB11FIP2
Miscellaneous
canSAR (ICR)RAB11FIP2
HarmonizomeRAB11FIP2
DataMed IndexRAB11FIP2
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRAB11FIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:27:43 CEST 2021

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