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RAB11FIP2 (RAB11 family interacting protein 2)

Identity

Alias_namesRAB11 family interacting protein 2 (class I)
Alias_symbol (synonym)KIAA0941
nRip11
Rab11-FIP2
Other alias
HGNC (Hugo) RAB11FIP2
LocusID (NCBI) 22841
Atlas_Id 55843
Location 10q26.11  [Link to chromosome band 10q26]
Location_base_pair Starts at 118004916 and ends at 118046884 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CADM4 (19q13.31) / RAB11FIP2 (10q26.11)RAB11FIP2 (10q26.11) / HMGXB4 (22q12.3)RAB11FIP2 (10q26.11) / RAB11FIP2 (10q26.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB11FIP2   29152
Cards
Entrez_Gene (NCBI)RAB11FIP2  22841  RAB11 family interacting protein 2
AliasesRab11-FIP2; nRip11
GeneCards (Weizmann)RAB11FIP2
Ensembl hg19 (Hinxton)ENSG00000107560 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107560 [Gene_View]  chr10:118004916-118046884 [Contig_View]  RAB11FIP2 [Vega]
ICGC DataPortalENSG00000107560
TCGA cBioPortalRAB11FIP2
AceView (NCBI)RAB11FIP2
Genatlas (Paris)RAB11FIP2
WikiGenes22841
SOURCE (Princeton)RAB11FIP2
Genetics Home Reference (NIH)RAB11FIP2
Genomic and cartography
GoldenPath hg38 (UCSC)RAB11FIP2  -     chr10:118004916-118046884 -  10q26.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RAB11FIP2  -     10q26.11   [Description]    (hg19-Feb_2009)
EnsemblRAB11FIP2 - 10q26.11 [CytoView hg19]  RAB11FIP2 - 10q26.11 [CytoView hg38]
Mapping of homologs : NCBIRAB11FIP2 [Mapview hg19]  RAB11FIP2 [Mapview hg38]
OMIM608599   
Gene and transcription
Genbank (Entrez)AB023158 AY037299 BC075073 BC075074 BM975322
RefSeq transcript (Entrez)NM_001330167 NM_014904
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RAB11FIP2
Cluster EST : UnigeneHs.173656 [ NCBI ]
CGAP (NCI)Hs.173656
Alternative Splicing GalleryENSG00000107560
Gene ExpressionRAB11FIP2 [ NCBI-GEO ]   RAB11FIP2 [ EBI - ARRAY_EXPRESS ]   RAB11FIP2 [ SEEK ]   RAB11FIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB11FIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22841
GTEX Portal (Tissue expression)RAB11FIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L804   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L804  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L804
Splice isoforms : SwissVarQ7L804
PhosPhoSitePlusQ7L804
Domaine pattern : Prosite (Expaxy)C2 (PS50004)    FIP_RBD (PS51511)   
Domains : Interpro (EBI)C2_dom    Rab-bd_FIP-RBD   
Domain families : Pfam (Sanger)C2 (PF00168)    RBD-FIP (PF09457)   
Domain families : Pfam (NCBI)pfam00168    pfam09457   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)RAB11FIP2
DMDM Disease mutations22841
Blocks (Seattle)RAB11FIP2
PDB (SRS)2GZD    2GZH    2K6S    3TSO    4C4P   
PDB (PDBSum)2GZD    2GZH    2K6S    3TSO    4C4P   
PDB (IMB)2GZD    2GZH    2K6S    3TSO    4C4P   
PDB (RSDB)2GZD    2GZH    2K6S    3TSO    4C4P   
Structural Biology KnowledgeBase2GZD    2GZH    2K6S    3TSO    4C4P   
SCOP (Structural Classification of Proteins)2GZD    2GZH    2K6S    3TSO    4C4P   
CATH (Classification of proteins structures)2GZD    2GZH    2K6S    3TSO    4C4P   
SuperfamilyQ7L804
Human Protein AtlasENSG00000107560
Peptide AtlasQ7L804
HPRD10548
IPIIPI00479368   IPI00007145   
Protein Interaction databases
DIP (DOE-UCLA)Q7L804
IntAct (EBI)Q7L804
FunCoupENSG00000107560
BioGRIDRAB11FIP2
STRING (EMBL)RAB11FIP2
ZODIACRAB11FIP2
Ontologies - Pathways
QuickGOQ7L804
Ontology : AmiGOrenal water homeostasis  protein binding  nucleoplasm  endosome  plasma membrane  Rab GTPase binding  protein kinase binding  establishment of cell polarity  cytoplasmic vesicle membrane  insulin secretion involved in cellular response to glucose stimulus  protein homodimerization activity  intracellular membrane-bounded organelle  intracellular membrane-bounded organelle  regulated exocytosis  regulated exocytosis  recycling endosome membrane  positive regulation of protein localization to plasma membrane  
Ontology : EGO-EBIrenal water homeostasis  protein binding  nucleoplasm  endosome  plasma membrane  Rab GTPase binding  protein kinase binding  establishment of cell polarity  cytoplasmic vesicle membrane  insulin secretion involved in cellular response to glucose stimulus  protein homodimerization activity  intracellular membrane-bounded organelle  intracellular membrane-bounded organelle  regulated exocytosis  regulated exocytosis  recycling endosome membrane  positive regulation of protein localization to plasma membrane  
Pathways : KEGGEndocytosis   
NDEx NetworkRAB11FIP2
Atlas of Cancer Signalling NetworkRAB11FIP2
Wikipedia pathwaysRAB11FIP2
Orthology - Evolution
OrthoDB22841
GeneTree (enSembl)ENSG00000107560
Phylogenetic Trees/Animal Genes : TreeFamRAB11FIP2
HOVERGENQ7L804
HOGENOMQ7L804
Homologs : HomoloGeneRAB11FIP2
Homology/Alignments : Family Browser (UCSC)RAB11FIP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB11FIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB11FIP2
dbVarRAB11FIP2
ClinVarRAB11FIP2
1000_GenomesRAB11FIP2 
Exome Variant ServerRAB11FIP2
ExAC (Exome Aggregation Consortium)RAB11FIP2 (select the gene name)
Genetic variants : HAPMAP22841
Genomic Variants (DGV)RAB11FIP2 [DGVbeta]
DECIPHERRAB11FIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRAB11FIP2 
Mutations
ICGC Data PortalRAB11FIP2 
TCGA Data PortalRAB11FIP2 
Broad Tumor PortalRAB11FIP2
OASIS PortalRAB11FIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB11FIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB11FIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB11FIP2
DgiDB (Drug Gene Interaction Database)RAB11FIP2
DoCM (Curated mutations)RAB11FIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB11FIP2 (select a term)
intoGenRAB11FIP2
Cancer3DRAB11FIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608599   
Orphanet
MedgenRAB11FIP2
Genetic Testing Registry RAB11FIP2
NextProtQ7L804 [Medical]
TSGene22841
GENETestsRAB11FIP2
Target ValidationRAB11FIP2
Huge Navigator RAB11FIP2 [HugePedia]
snp3D : Map Gene to Disease22841
BioCentury BCIQRAB11FIP2
ClinGenRAB11FIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22841
Chemical/Pharm GKB GenePA134961225
Clinical trialRAB11FIP2
Miscellaneous
canSAR (ICR)RAB11FIP2 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB11FIP2
EVEXRAB11FIP2
GoPubMedRAB11FIP2
iHOPRAB11FIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:52:01 CEST 2017

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