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RAB11FIP3 (RAB11 family interacting protein 3 (class II))

Identity

Alias_namesRAB11 family interacting protein 3 (class II)
Alias_symbol (synonym)KIAA0665
Rab11-FIP3
eferin
Other aliasCART1
HGNC (Hugo) RAB11FIP3
LocusID (NCBI) 9727
Atlas_Id 51041
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 524850 and ends at 572481 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAM195A (16p13.3) / RAB11FIP3 (16p13.3)RAB11FIP3 (16p13.3) / NAA60 (16p13.3)RAB11FIP3 (16p13.3) / NCK1 (3q22.3)
RAB11FIP3 (16p13.3) / RAB11FIP3 (16p13.3)RNF187 (1q42.13) / RAB11FIP3 (16p13.3)TPO (2p25.3) / RAB11FIP3 (16p13.3)
FAM195A 16p13.3 / RAB11FIP3 16p13.3RAB11FIP3 16p13.3 / NAA60 16p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RAB11FIP3   17224
Cards
Entrez_Gene (NCBI)RAB11FIP3  9727  RAB11 family interacting protein 3 (class II)
AliasesCART1; Rab11-FIP3
GeneCards (Weizmann)RAB11FIP3
Ensembl hg19 (Hinxton)ENSG00000090565 [Gene_View]  chr16:524850-572481 [Contig_View]  RAB11FIP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000090565 [Gene_View]  chr16:524850-572481 [Contig_View]  RAB11FIP3 [Vega]
ICGC DataPortalENSG00000090565
TCGA cBioPortalRAB11FIP3
AceView (NCBI)RAB11FIP3
Genatlas (Paris)RAB11FIP3
WikiGenes9727
SOURCE (Princeton)RAB11FIP3
Genetics Home Reference (NIH)RAB11FIP3
Genomic and cartography
GoldenPath hg19 (UCSC)RAB11FIP3  -     chr16:524850-572481 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RAB11FIP3  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblRAB11FIP3 - 16p13.3 [CytoView hg19]  RAB11FIP3 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIRAB11FIP3 [Mapview hg19]  RAB11FIP3 [Mapview hg38]
OMIM608738   
Gene and transcription
Genbank (Entrez)AB014565 AF038180 AF395731 AK293644 AK303061
RefSeq transcript (Entrez)NM_001142272 NM_014700
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NT_187610 NW_004929400
Consensus coding sequences : CCDS (NCBI)RAB11FIP3
Cluster EST : UnigeneHs.531642 [ NCBI ]
CGAP (NCI)Hs.531642
Alternative Splicing GalleryENSG00000090565
Gene ExpressionRAB11FIP3 [ NCBI-GEO ]   RAB11FIP3 [ EBI - ARRAY_EXPRESS ]   RAB11FIP3 [ SEEK ]   RAB11FIP3 [ MEM ]
Gene Expression Viewer (FireBrowse)RAB11FIP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9727
GTEX Portal (Tissue expression)RAB11FIP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75154   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75154  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75154
Splice isoforms : SwissVarO75154
PhosPhoSitePlusO75154
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)    FIP_RBD (PS51511)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom    Rab-bd_FIP-RBD    Rab11-FIP3   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    RBD-FIP (PF09457)   
Domain families : Pfam (NCBI)pfam13499    pfam09457   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)RAB11FIP3
DMDM Disease mutations9727
Blocks (Seattle)RAB11FIP3
PDB (SRS)2D7C    2HV8    4D0M    4UJ3    4UJ4   
PDB (PDBSum)2D7C    2HV8    4D0M    4UJ3    4UJ4   
PDB (IMB)2D7C    2HV8    4D0M    4UJ3    4UJ4   
PDB (RSDB)2D7C    2HV8    4D0M    4UJ3    4UJ4   
Structural Biology KnowledgeBase2D7C    2HV8    4D0M    4UJ3    4UJ4   
SCOP (Structural Classification of Proteins)2D7C    2HV8    4D0M    4UJ3    4UJ4   
CATH (Classification of proteins structures)2D7C    2HV8    4D0M    4UJ3    4UJ4   
SuperfamilyO75154
Human Protein AtlasENSG00000090565
Peptide AtlasO75154
HPRD18521
IPIIPI00024426   IPI00853085   IPI00879102   IPI00942326   IPI00853060   IPI00878909   
Protein Interaction databases
DIP (DOE-UCLA)O75154
IntAct (EBI)O75154
FunCoupENSG00000090565
BioGRIDRAB11FIP3
STRING (EMBL)RAB11FIP3
ZODIACRAB11FIP3
Ontologies - Pathways
QuickGOO75154
Ontology : AmiGOcytokinesis  calcium ion binding  protein binding  nucleoplasm  endosome  centrosome  microtubule organizing center  cytosol  vesicle-mediated transport  Rab GTPase binding  Rab GTPase binding  ADP-ribosylation factor binding  midbody  cleavage furrow  endocytic recycling  protein homodimerization activity  intracellular membrane-bounded organelle  intercellular bridge  dynein light intermediate chain binding  recycling endosome  recycling endosome membrane  protein localization to cilium  negative regulation of adiponectin secretion  
Ontology : EGO-EBIcytokinesis  calcium ion binding  protein binding  nucleoplasm  endosome  centrosome  microtubule organizing center  cytosol  vesicle-mediated transport  Rab GTPase binding  Rab GTPase binding  ADP-ribosylation factor binding  midbody  cleavage furrow  endocytic recycling  protein homodimerization activity  intracellular membrane-bounded organelle  intercellular bridge  dynein light intermediate chain binding  recycling endosome  recycling endosome membrane  protein localization to cilium  negative regulation of adiponectin secretion  
Pathways : KEGGEndocytosis   
NDEx NetworkRAB11FIP3
Atlas of Cancer Signalling NetworkRAB11FIP3
Wikipedia pathwaysRAB11FIP3
Orthology - Evolution
OrthoDB9727
GeneTree (enSembl)ENSG00000090565
Phylogenetic Trees/Animal Genes : TreeFamRAB11FIP3
HOVERGENO75154
HOGENOMO75154
Homologs : HomoloGeneRAB11FIP3
Homology/Alignments : Family Browser (UCSC)RAB11FIP3
Gene fusions - Rearrangements
Fusion : MitelmanFAM195A/RAB11FIP3 [16p13.3/16p13.3]  [t(16;16)(p13;p13)]  
Fusion : MitelmanRAB11FIP3/NAA60 [16p13.3/16p13.3]  [t(16;16)(p13;p13)]  
Fusion: TCGAFAM195A 16p13.3 RAB11FIP3 16p13.3 OV
Fusion: TCGARAB11FIP3 16p13.3 NAA60 16p13.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRAB11FIP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RAB11FIP3
dbVarRAB11FIP3
ClinVarRAB11FIP3
1000_GenomesRAB11FIP3 
Exome Variant ServerRAB11FIP3
ExAC (Exome Aggregation Consortium)RAB11FIP3 (select the gene name)
Genetic variants : HAPMAP9727
Genomic Variants (DGV)RAB11FIP3 [DGVbeta]
DECIPHER (Syndromes)16:524850-572481  ENSG00000090565
CONAN: Copy Number AnalysisRAB11FIP3 
Mutations
ICGC Data PortalRAB11FIP3 
TCGA Data PortalRAB11FIP3 
Broad Tumor PortalRAB11FIP3
OASIS PortalRAB11FIP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRAB11FIP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRAB11FIP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RAB11FIP3
DgiDB (Drug Gene Interaction Database)RAB11FIP3
DoCM (Curated mutations)RAB11FIP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RAB11FIP3 (select a term)
intoGenRAB11FIP3
Cancer3DRAB11FIP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608738   
Orphanet
MedgenRAB11FIP3
Genetic Testing Registry RAB11FIP3
NextProtO75154 [Medical]
TSGene9727
GENETestsRAB11FIP3
Huge Navigator RAB11FIP3 [HugePedia]
snp3D : Map Gene to Disease9727
BioCentury BCIQRAB11FIP3
ClinGenRAB11FIP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9727
Chemical/Pharm GKB GenePA134950896
Clinical trialRAB11FIP3
Miscellaneous
canSAR (ICR)RAB11FIP3 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRAB11FIP3
EVEXRAB11FIP3
GoPubMedRAB11FIP3
iHOPRAB11FIP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:16:25 CEST 2017

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